Hb_011609_170

Information

Type -
Description -
Location Contig11609: 177392-183353
Sequence    

Annotation

kegg
ID rcu:RCOM_1727810
description chaperonin containing t-complex protein 1, zeta subunit, tcpz, putative
nr
ID XP_012077951.1
description PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
swissprot
ID Q9M888
description T-complex protein 1 subunit zeta 1 OS=Arabidopsis thaliana GN=CCT6A PE=1 SV=1
trembl
ID A0A067KKY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12971 PE=3 SV=1
Gene Ontology
ID GO:0005524
description t-complex protein 1 subunit zeta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04970: 177589-183341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_170 0.0 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
2 Hb_008725_130 0.0688670271 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
3 Hb_005408_020 0.0692568218 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002942_050 0.0740645982 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
5 Hb_000868_060 0.0769457378 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
6 Hb_001050_010 0.0775114929 - - Advillin [Gossypium arboreum]
7 Hb_001163_120 0.0775560058 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_001900_120 0.0787611287 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
9 Hb_003680_230 0.0806671552 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
10 Hb_011915_010 0.0819737236 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
11 Hb_000021_020 0.0820228153 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
12 Hb_017895_020 0.0821341746 - - Vacuolar protein sorting protein, putative [Ricinus communis]
13 Hb_002888_070 0.0829755803 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
14 Hb_000329_130 0.0867593738 - - beta-tubulin cofactor d, putative [Ricinus communis]
15 Hb_080147_040 0.0868681336 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
16 Hb_001882_040 0.0879494128 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
17 Hb_003126_100 0.0891915863 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
18 Hb_001085_320 0.089372701 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
19 Hb_028872_120 0.090307312 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
20 Hb_000914_080 0.0903117231 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_011609_170 Hb_011609_170 Hb_008725_130 Hb_008725_130 Hb_011609_170--Hb_008725_130 Hb_005408_020 Hb_005408_020 Hb_011609_170--Hb_005408_020 Hb_002942_050 Hb_002942_050 Hb_011609_170--Hb_002942_050 Hb_000868_060 Hb_000868_060 Hb_011609_170--Hb_000868_060 Hb_001050_010 Hb_001050_010 Hb_011609_170--Hb_001050_010 Hb_001163_120 Hb_001163_120 Hb_011609_170--Hb_001163_120 Hb_017895_020 Hb_017895_020 Hb_008725_130--Hb_017895_020 Hb_000329_130 Hb_000329_130 Hb_008725_130--Hb_000329_130 Hb_002675_040 Hb_002675_040 Hb_008725_130--Hb_002675_040 Hb_008725_130--Hb_005408_020 Hb_001900_120 Hb_001900_120 Hb_008725_130--Hb_001900_120 Hb_002307_350 Hb_002307_350 Hb_005408_020--Hb_002307_350 Hb_000914_080 Hb_000914_080 Hb_005408_020--Hb_000914_080 Hb_009151_020 Hb_009151_020 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030 Hb_011310_130 Hb_011310_130 Hb_002942_050--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_002942_050--Hb_000777_050 Hb_003680_230 Hb_003680_230 Hb_002942_050--Hb_003680_230 Hb_011310_210 Hb_011310_210 Hb_002942_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_002942_050--Hb_003549_090 Hb_001143_180 Hb_001143_180 Hb_002942_050--Hb_001143_180 Hb_002888_070 Hb_002888_070 Hb_000868_060--Hb_002888_070 Hb_000395_020 Hb_000395_020 Hb_000868_060--Hb_000395_020 Hb_000868_060--Hb_001050_010 Hb_001102_080 Hb_001102_080 Hb_000868_060--Hb_001102_080 Hb_001085_320 Hb_001085_320 Hb_000868_060--Hb_001085_320 Hb_001040_040 Hb_001040_040 Hb_000868_060--Hb_001040_040 Hb_000002_490 Hb_000002_490 Hb_001050_010--Hb_000002_490 Hb_011915_010 Hb_011915_010 Hb_001050_010--Hb_011915_010 Hb_001050_010--Hb_001900_120 Hb_001050_010--Hb_000395_020 Hb_001163_120--Hb_011310_130 Hb_000031_280 Hb_000031_280 Hb_001163_120--Hb_000031_280 Hb_008556_030 Hb_008556_030 Hb_001163_120--Hb_008556_030 Hb_001163_120--Hb_002942_050 Hb_012404_070 Hb_012404_070 Hb_001163_120--Hb_012404_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.132 43.3165 54.7892 30.9993 71.9206 74.6646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6634 14.871 22.7168 27.0538 21.0356

CAGE analysis