Hb_002307_350

Information

Type -
Description -
Location Contig2307: 379933-386881
Sequence    

Annotation

kegg
ID rcu:RCOM_0617610
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_002527764.1
description eukaryotic translation initiation factor 2c, putative [Ricinus communis]
swissprot
ID Q9ZVD5
description Protein argonaute 4 OS=Arabidopsis thaliana GN=AGO4 PE=1 SV=2
trembl
ID B9SP45
description Eukaryotic translation initiation factor 2c, putative OS=Ricinus communis GN=RCOM_0617610 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein argonaute 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24265: 381096-381411 , PASA_asmbl_24266: 379978-386854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_350 0.0 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
2 Hb_005408_020 0.063515994 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002249_120 0.0797031329 - - RNA-binding protein, putative [Ricinus communis]
4 Hb_008725_130 0.0838945345 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
5 Hb_017895_020 0.0852358061 - - Vacuolar protein sorting protein, putative [Ricinus communis]
6 Hb_000914_080 0.0867000735 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000021_020 0.0898810048 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
8 Hb_000120_620 0.0899417372 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
9 Hb_001369_350 0.0902780986 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
10 Hb_011609_170 0.091251411 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
11 Hb_001178_150 0.0925188605 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
12 Hb_000025_650 0.0929477084 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
13 Hb_002681_170 0.095364486 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
14 Hb_001489_070 0.0969370205 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
15 Hb_000363_380 0.0978397223 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
16 Hb_000347_570 0.0979307855 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
17 Hb_005462_020 0.0991720264 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
18 Hb_001473_090 0.1003823231 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
19 Hb_010925_020 0.1007561525 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
20 Hb_009151_020 0.1012086838 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]

Gene co-expression network

sample Hb_002307_350 Hb_002307_350 Hb_005408_020 Hb_005408_020 Hb_002307_350--Hb_005408_020 Hb_002249_120 Hb_002249_120 Hb_002307_350--Hb_002249_120 Hb_008725_130 Hb_008725_130 Hb_002307_350--Hb_008725_130 Hb_017895_020 Hb_017895_020 Hb_002307_350--Hb_017895_020 Hb_000914_080 Hb_000914_080 Hb_002307_350--Hb_000914_080 Hb_000021_020 Hb_000021_020 Hb_002307_350--Hb_000021_020 Hb_011609_170 Hb_011609_170 Hb_005408_020--Hb_011609_170 Hb_005408_020--Hb_000914_080 Hb_005408_020--Hb_008725_130 Hb_009151_020 Hb_009151_020 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030 Hb_002681_170 Hb_002681_170 Hb_002249_120--Hb_002681_170 Hb_002249_120--Hb_017895_020 Hb_003436_050 Hb_003436_050 Hb_002249_120--Hb_003436_050 Hb_002249_120--Hb_005408_020 Hb_001900_120 Hb_001900_120 Hb_002249_120--Hb_001900_120 Hb_008725_130--Hb_017895_020 Hb_008725_130--Hb_011609_170 Hb_000329_130 Hb_000329_130 Hb_008725_130--Hb_000329_130 Hb_002675_040 Hb_002675_040 Hb_008725_130--Hb_002675_040 Hb_008725_130--Hb_001900_120 Hb_017895_020--Hb_002675_040 Hb_017895_020--Hb_000329_130 Hb_017895_020--Hb_001900_120 Hb_028872_120 Hb_028872_120 Hb_017895_020--Hb_028872_120 Hb_017895_020--Hb_000914_080 Hb_002888_070 Hb_002888_070 Hb_000914_080--Hb_002888_070 Hb_000914_080--Hb_000329_130 Hb_003126_100 Hb_003126_100 Hb_000914_080--Hb_003126_100 Hb_000914_080--Hb_009151_020 Hb_003529_130 Hb_003529_130 Hb_000021_020--Hb_003529_130 Hb_000021_020--Hb_011609_170 Hb_006915_020 Hb_006915_020 Hb_000021_020--Hb_006915_020 Hb_000021_020--Hb_005408_020 Hb_000021_020--Hb_008725_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.4125 43.8185 48.7844 33.6054 102.723 94.3054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8945 9.30838 15.2706 31.5505 29.4992

CAGE analysis