Hb_030827_030

Information

Type -
Description -
Location Contig30827: 17032-23955
Sequence    

Annotation

kegg
ID rcu:RCOM_1496670
description ankyrin repeat-containing protein, putative
nr
ID XP_012090289.1
description PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
swissprot
ID Q4FE45
description E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana GN=XBAT33 PE=2 SV=1
trembl
ID A0A067JRZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26140 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase xbat33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32546: 17053-23910 , PASA_asmbl_32548: 18068-18376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030827_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
2 Hb_003126_100 0.07393588 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
3 Hb_001040_040 0.0779431419 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
4 Hb_000923_040 0.0780435856 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
5 Hb_000345_530 0.0787227979 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
6 Hb_000104_080 0.0827290939 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
7 Hb_002587_020 0.0828833027 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_005408_020 0.0834763183 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002249_160 0.0850954178 - - -
10 Hb_000640_220 0.0856664483 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
11 Hb_001584_290 0.0883016477 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
12 Hb_008725_130 0.0885756934 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
13 Hb_000480_010 0.0892770235 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001863_260 0.0898929188 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_001771_120 0.0916745757 - - K+ transport growth defect-like protein [Hevea brasiliensis]
16 Hb_011915_010 0.0928001 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
17 Hb_001266_140 0.0945851993 - - PREDICTED: protein RER1B [Jatropha curcas]
18 Hb_002249_120 0.0946594904 - - RNA-binding protein, putative [Ricinus communis]
19 Hb_002888_070 0.09569987 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
20 Hb_007044_040 0.0964912901 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]

Gene co-expression network

sample Hb_030827_030 Hb_030827_030 Hb_003126_100 Hb_003126_100 Hb_030827_030--Hb_003126_100 Hb_001040_040 Hb_001040_040 Hb_030827_030--Hb_001040_040 Hb_000923_040 Hb_000923_040 Hb_030827_030--Hb_000923_040 Hb_000345_530 Hb_000345_530 Hb_030827_030--Hb_000345_530 Hb_000104_080 Hb_000104_080 Hb_030827_030--Hb_000104_080 Hb_002587_020 Hb_002587_020 Hb_030827_030--Hb_002587_020 Hb_002888_070 Hb_002888_070 Hb_003126_100--Hb_002888_070 Hb_000480_010 Hb_000480_010 Hb_003126_100--Hb_000480_010 Hb_000002_490 Hb_000002_490 Hb_003126_100--Hb_000002_490 Hb_002749_110 Hb_002749_110 Hb_003126_100--Hb_002749_110 Hb_000914_080 Hb_000914_080 Hb_003126_100--Hb_000914_080 Hb_002093_030 Hb_002093_030 Hb_003126_100--Hb_002093_030 Hb_000395_020 Hb_000395_020 Hb_001040_040--Hb_000395_020 Hb_011915_010 Hb_011915_010 Hb_001040_040--Hb_011915_010 Hb_000868_060 Hb_000868_060 Hb_001040_040--Hb_000868_060 Hb_001040_040--Hb_000923_040 Hb_009252_100 Hb_009252_100 Hb_001040_040--Hb_009252_100 Hb_000923_040--Hb_000104_080 Hb_008887_050 Hb_008887_050 Hb_000923_040--Hb_008887_050 Hb_000923_040--Hb_000345_530 Hb_001584_290 Hb_001584_290 Hb_000923_040--Hb_001584_290 Hb_023001_020 Hb_023001_020 Hb_000923_040--Hb_023001_020 Hb_000345_530--Hb_000104_080 Hb_000345_530--Hb_001040_040 Hb_002249_160 Hb_002249_160 Hb_000345_530--Hb_002249_160 Hb_000976_080 Hb_000976_080 Hb_000345_530--Hb_000976_080 Hb_028707_090 Hb_028707_090 Hb_000104_080--Hb_028707_090 Hb_000104_080--Hb_001584_290 Hb_000236_280 Hb_000236_280 Hb_000104_080--Hb_000236_280 Hb_008143_030 Hb_008143_030 Hb_000104_080--Hb_008143_030 Hb_000104_080--Hb_023001_020 Hb_002587_020--Hb_001584_290 Hb_002587_020--Hb_008143_030 Hb_002652_040 Hb_002652_040 Hb_002587_020--Hb_002652_040 Hb_008595_010 Hb_008595_010 Hb_002587_020--Hb_008595_010 Hb_007407_040 Hb_007407_040 Hb_002587_020--Hb_007407_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.5675 15.5964 26.9839 15.4165 53.7139 48.4029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5387 11.1678 17.9292 11.5809 14.794

CAGE analysis