Hb_011915_010

Information

Type -
Description -
Location Contig11915: 3703-12147
Sequence    

Annotation

kegg
ID pmum:103326702
description nucleobase-ascorbate transporter 12
nr
ID XP_012076199.1
description PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
swissprot
ID Q3E7D0
description Nucleobase-ascorbate transporter 12 OS=Arabidopsis thaliana GN=NAT12 PE=1 SV=3
trembl
ID A0A067KDS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11259 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05658: 3816-12169 , PASA_asmbl_05660: 10952-11099 , PASA_asmbl_05661: 7612-7949 , PASA_asmbl_05662: 5856-6105
cDNA
(Sanger)
(ID:Location)		 032_F09.ab1: 3816-5204 , 033_J14.ab1: 11944-12169 , 034_L19.ab1: 11944-12169

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011915_010 0.0 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
2 Hb_001040_040 0.072354767 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
3 Hb_001050_010 0.0747024395 - - Advillin [Gossypium arboreum]
4 Hb_002249_160 0.0753038109 - - -
5 Hb_011609_170 0.0819737236 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
6 Hb_007044_040 0.0845464718 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
7 Hb_001198_150 0.0891755095 - - hypothetical protein POPTR_0003s01280g [Populus trichocarpa]
8 Hb_002888_070 0.0907713009 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
9 Hb_030827_030 0.0928001 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
10 Hb_001102_080 0.0946105211 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
11 Hb_000868_060 0.0954537921 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
12 Hb_000809_210 0.0957800412 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
13 Hb_001160_120 0.0964614065 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003126_100 0.0969889806 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
15 Hb_001900_120 0.0986890101 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
16 Hb_005408_020 0.0988951549 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000914_080 0.0995362742 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_002092_100 0.0998996933 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
19 Hb_000345_530 0.1004125788 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
20 Hb_017895_020 0.1021487837 - - Vacuolar protein sorting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011915_010 Hb_011915_010 Hb_001040_040 Hb_001040_040 Hb_011915_010--Hb_001040_040 Hb_001050_010 Hb_001050_010 Hb_011915_010--Hb_001050_010 Hb_002249_160 Hb_002249_160 Hb_011915_010--Hb_002249_160 Hb_011609_170 Hb_011609_170 Hb_011915_010--Hb_011609_170 Hb_007044_040 Hb_007044_040 Hb_011915_010--Hb_007044_040 Hb_001198_150 Hb_001198_150 Hb_011915_010--Hb_001198_150 Hb_000395_020 Hb_000395_020 Hb_001040_040--Hb_000395_020 Hb_000868_060 Hb_000868_060 Hb_001040_040--Hb_000868_060 Hb_000923_040 Hb_000923_040 Hb_001040_040--Hb_000923_040 Hb_009252_100 Hb_009252_100 Hb_001040_040--Hb_009252_100 Hb_030827_030 Hb_030827_030 Hb_001040_040--Hb_030827_030 Hb_001050_010--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_001050_010--Hb_000002_490 Hb_001900_120 Hb_001900_120 Hb_001050_010--Hb_001900_120 Hb_001050_010--Hb_011609_170 Hb_001050_010--Hb_000395_020 Hb_002249_160--Hb_030827_030 Hb_000345_530 Hb_000345_530 Hb_002249_160--Hb_000345_530 Hb_002249_160--Hb_001050_010 Hb_005408_020 Hb_005408_020 Hb_002249_160--Hb_005408_020 Hb_003126_100 Hb_003126_100 Hb_002249_160--Hb_003126_100 Hb_008725_130 Hb_008725_130 Hb_011609_170--Hb_008725_130 Hb_011609_170--Hb_005408_020 Hb_002942_050 Hb_002942_050 Hb_011609_170--Hb_002942_050 Hb_011609_170--Hb_000868_060 Hb_001163_120 Hb_001163_120 Hb_011609_170--Hb_001163_120 Hb_001102_080 Hb_001102_080 Hb_007044_040--Hb_001102_080 Hb_007044_040--Hb_003126_100 Hb_002093_030 Hb_002093_030 Hb_007044_040--Hb_002093_030 Hb_000480_010 Hb_000480_010 Hb_007044_040--Hb_000480_010 Hb_002888_070 Hb_002888_070 Hb_007044_040--Hb_002888_070 Hb_000914_080 Hb_000914_080 Hb_001198_150--Hb_000914_080 Hb_001198_150--Hb_001102_080 Hb_017895_020 Hb_017895_020 Hb_001198_150--Hb_017895_020 Hb_001198_150--Hb_007044_040 Hb_000922_140 Hb_000922_140 Hb_001198_150--Hb_000922_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.52 12.6293 25.8227 10.0355 37.6691 25.3938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6652 5.27629 8.91093 11.548 10.4158

CAGE analysis