Hb_009252_100

Information

Type -
Description -
Location Contig9252: 114925-119987
Sequence    

Annotation

kegg
ID rcu:RCOM_1511180
description protein kinase atmrk1, putative (EC:2.7.10.2)
nr
ID XP_012080088.1
description PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067KFT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11491 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62629: 116882-117328 , PASA_asmbl_62630: 115145-119898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009252_100 0.0 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
2 Hb_001040_040 0.0768394409 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
3 Hb_001083_050 0.0831051242 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
4 Hb_106552_050 0.0842364498 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
5 Hb_000477_030 0.0843587904 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
6 Hb_002326_020 0.0848677814 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
7 Hb_001357_380 0.0858682017 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_000261_220 0.0860359777 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
9 Hb_000406_240 0.0899095016 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
10 Hb_005883_010 0.0902910692 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000395_020 0.0907777003 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
12 Hb_000368_020 0.0920028061 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
13 Hb_000140_330 0.0958025424 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
14 Hb_008554_120 0.0958493553 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
15 Hb_001894_030 0.0963138661 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
16 Hb_002026_140 0.0981179872 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
17 Hb_001486_080 0.0985258023 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
18 Hb_003680_230 0.0986565704 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
19 Hb_000359_330 0.102075818 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004635_050 0.1023753532 - - nucleolar phosphoprotein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009252_100 Hb_009252_100 Hb_001040_040 Hb_001040_040 Hb_009252_100--Hb_001040_040 Hb_001083_050 Hb_001083_050 Hb_009252_100--Hb_001083_050 Hb_106552_050 Hb_106552_050 Hb_009252_100--Hb_106552_050 Hb_000477_030 Hb_000477_030 Hb_009252_100--Hb_000477_030 Hb_002326_020 Hb_002326_020 Hb_009252_100--Hb_002326_020 Hb_001357_380 Hb_001357_380 Hb_009252_100--Hb_001357_380 Hb_000395_020 Hb_000395_020 Hb_001040_040--Hb_000395_020 Hb_011915_010 Hb_011915_010 Hb_001040_040--Hb_011915_010 Hb_000868_060 Hb_000868_060 Hb_001040_040--Hb_000868_060 Hb_000923_040 Hb_000923_040 Hb_001040_040--Hb_000923_040 Hb_030827_030 Hb_030827_030 Hb_001040_040--Hb_030827_030 Hb_000261_220 Hb_000261_220 Hb_001083_050--Hb_000261_220 Hb_001083_050--Hb_000477_030 Hb_057878_010 Hb_057878_010 Hb_001083_050--Hb_057878_010 Hb_005883_010 Hb_005883_010 Hb_001083_050--Hb_005883_010 Hb_001171_070 Hb_001171_070 Hb_001083_050--Hb_001171_070 Hb_008803_090 Hb_008803_090 Hb_106552_050--Hb_008803_090 Hb_000976_320 Hb_000976_320 Hb_106552_050--Hb_000976_320 Hb_001926_030 Hb_001926_030 Hb_106552_050--Hb_001926_030 Hb_002192_080 Hb_002192_080 Hb_106552_050--Hb_002192_080 Hb_000808_250 Hb_000808_250 Hb_106552_050--Hb_000808_250 Hb_004055_150 Hb_004055_150 Hb_106552_050--Hb_004055_150 Hb_005505_050 Hb_005505_050 Hb_000477_030--Hb_005505_050 Hb_000477_030--Hb_106552_050 Hb_002784_050 Hb_002784_050 Hb_000477_030--Hb_002784_050 Hb_001541_260 Hb_001541_260 Hb_000477_030--Hb_001541_260 Hb_000258_120 Hb_000258_120 Hb_002326_020--Hb_000258_120 Hb_003680_230 Hb_003680_230 Hb_002326_020--Hb_003680_230 Hb_000331_160 Hb_000331_160 Hb_002326_020--Hb_000331_160 Hb_006816_050 Hb_006816_050 Hb_002326_020--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_002326_020--Hb_004635_050 Hb_000211_110 Hb_000211_110 Hb_001357_380--Hb_000211_110 Hb_000059_140 Hb_000059_140 Hb_001357_380--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_001357_380--Hb_011942_080 Hb_000106_130 Hb_000106_130 Hb_001357_380--Hb_000106_130 Hb_001486_340 Hb_001486_340 Hb_001357_380--Hb_001486_340 Hb_001894_030 Hb_001894_030 Hb_001357_380--Hb_001894_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.1124 37.366 39.5279 20.3836 60.268 41.5097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.4493 22.1752 24.7903 18.8072 8.31107

CAGE analysis