Hb_002192_080

Information

Type -
Description -
Location Contig2192: 91036-94317
Sequence    

Annotation

kegg
ID crb:CARUB_v10001317mg
description hypothetical protein
nr
ID KJB79847.1
description hypothetical protein B456_013G069200 [Gossypium raimondii]
swissprot
ID P68209
description Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1
trembl
ID A0A0D2S9P6
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G069200 PE=4 SV=1
Gene Ontology
ID GO:0005618
description succinyl- ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22570: 91057-129966
cDNA
(Sanger)
(ID:Location)		 003_M04.ab1: 91057-109744 , 008_I10.ab1: 91187-109746 , 009_F21.ab1: 91057-94239 , 012_N07.ab1: 91154-109773 , 040_F14.ab1: 91187-112251

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002192_080 0.0 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
2 Hb_012389_020 0.0579304775 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
3 Hb_000261_250 0.0652085271 - - elongation factor 1-alpha [Lepidium sativum]
4 Hb_106552_050 0.069791854 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
5 Hb_000107_190 0.071448142 - - 50S ribosomal protein L20 [Hevea brasiliensis]
6 Hb_003849_060 0.0744824045 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
7 Hb_032920_060 0.0751846134 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
8 Hb_000394_190 0.076004709 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
9 Hb_000926_310 0.0787794132 - - uncharacterized protein LOC100500241 [Glycine max]
10 Hb_032208_040 0.0810728876 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
11 Hb_002639_150 0.0819442122 - - -
12 Hb_000610_010 0.0821225978 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
13 Hb_000661_140 0.0829561378 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
14 Hb_000179_030 0.0830703755 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
15 Hb_008803_090 0.0835963617 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
16 Hb_001926_030 0.0840287723 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
17 Hb_001142_050 0.0852822941 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
18 Hb_000808_250 0.0856282544 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
19 Hb_000853_430 0.0858378021 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
20 Hb_000275_170 0.0873225645 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]

Gene co-expression network

sample Hb_002192_080 Hb_002192_080 Hb_012389_020 Hb_012389_020 Hb_002192_080--Hb_012389_020 Hb_000261_250 Hb_000261_250 Hb_002192_080--Hb_000261_250 Hb_106552_050 Hb_106552_050 Hb_002192_080--Hb_106552_050 Hb_000107_190 Hb_000107_190 Hb_002192_080--Hb_000107_190 Hb_003849_060 Hb_003849_060 Hb_002192_080--Hb_003849_060 Hb_032920_060 Hb_032920_060 Hb_002192_080--Hb_032920_060 Hb_004586_140 Hb_004586_140 Hb_012389_020--Hb_004586_140 Hb_003125_200 Hb_003125_200 Hb_012389_020--Hb_003125_200 Hb_004931_070 Hb_004931_070 Hb_012389_020--Hb_004931_070 Hb_000302_270 Hb_000302_270 Hb_012389_020--Hb_000302_270 Hb_000853_430 Hb_000853_430 Hb_012389_020--Hb_000853_430 Hb_000394_190 Hb_000394_190 Hb_000261_250--Hb_000394_190 Hb_001142_050 Hb_001142_050 Hb_000261_250--Hb_001142_050 Hb_000359_330 Hb_000359_330 Hb_000261_250--Hb_000359_330 Hb_000261_250--Hb_003849_060 Hb_000261_250--Hb_106552_050 Hb_008803_090 Hb_008803_090 Hb_106552_050--Hb_008803_090 Hb_000976_320 Hb_000976_320 Hb_106552_050--Hb_000976_320 Hb_001926_030 Hb_001926_030 Hb_106552_050--Hb_001926_030 Hb_000808_250 Hb_000808_250 Hb_106552_050--Hb_000808_250 Hb_004055_150 Hb_004055_150 Hb_106552_050--Hb_004055_150 Hb_073973_130 Hb_073973_130 Hb_000107_190--Hb_073973_130 Hb_002296_050 Hb_002296_050 Hb_000107_190--Hb_002296_050 Hb_000610_010 Hb_000610_010 Hb_000107_190--Hb_000610_010 Hb_058972_010 Hb_058972_010 Hb_000107_190--Hb_058972_010 Hb_005337_090 Hb_005337_090 Hb_000107_190--Hb_005337_090 Hb_003849_060--Hb_000808_250 Hb_000334_270 Hb_000334_270 Hb_003849_060--Hb_000334_270 Hb_003467_010 Hb_003467_010 Hb_003849_060--Hb_003467_010 Hb_011848_010 Hb_011848_010 Hb_003849_060--Hb_011848_010 Hb_003849_060--Hb_000394_190 Hb_003528_010 Hb_003528_010 Hb_032920_060--Hb_003528_010 Hb_032920_060--Hb_005337_090 Hb_027428_010 Hb_027428_010 Hb_032920_060--Hb_027428_010 Hb_032920_060--Hb_073973_130 Hb_032920_060--Hb_012389_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
193.237 124.441 153.378 72.2725 161.474 195.383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
116.592 178.414 101.147 79.0968 41.2338

CAGE analysis