Hb_001142_050

Information

Type -
Description -
Location Contig1142: 83628-91447
Sequence    

Annotation

kegg
ID vvi:100244142
description coiled-coil domain-containing protein 12
nr
ID XP_012079595.1
description PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
swissprot
ID Q8R344
description Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2
trembl
ID A0A067LN12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17431 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04316: 84522-91480 , PASA_asmbl_04317: 84386-91480
cDNA
(Sanger)
(ID:Location)		 051_C10.ab1: 84522-85566

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001142_050 0.0 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
2 Hb_000012_020 0.0656389253 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
3 Hb_000976_260 0.0683904264 - - -
4 Hb_011848_010 0.0706557926 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
5 Hb_000261_250 0.0734808557 - - elongation factor 1-alpha [Lepidium sativum]
6 Hb_009222_010 0.0763909789 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_003467_010 0.0778456188 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
8 Hb_004450_060 0.0797559993 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
9 Hb_003849_060 0.081255435 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
10 Hb_003044_100 0.0846976593 - - hypothetical protein F383_08446 [Gossypium arboreum]
11 Hb_002192_080 0.0852822941 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
12 Hb_000808_250 0.0855667993 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
13 Hb_003091_010 0.0862155374 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
14 Hb_000785_030 0.0864156599 - - hypothetical protein RCOM_0808030 [Ricinus communis]
15 Hb_000392_050 0.0869423563 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
16 Hb_000803_110 0.0872769707 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
17 Hb_002639_150 0.0888374822 - - -
18 Hb_000290_020 0.0897582653 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
19 Hb_000394_190 0.0898094164 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
20 Hb_012799_110 0.0903921777 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_001142_050 Hb_001142_050 Hb_000012_020 Hb_000012_020 Hb_001142_050--Hb_000012_020 Hb_000976_260 Hb_000976_260 Hb_001142_050--Hb_000976_260 Hb_011848_010 Hb_011848_010 Hb_001142_050--Hb_011848_010 Hb_000261_250 Hb_000261_250 Hb_001142_050--Hb_000261_250 Hb_009222_010 Hb_009222_010 Hb_001142_050--Hb_009222_010 Hb_003467_010 Hb_003467_010 Hb_001142_050--Hb_003467_010 Hb_003044_100 Hb_003044_100 Hb_000012_020--Hb_003044_100 Hb_000012_020--Hb_000976_260 Hb_000290_020 Hb_000290_020 Hb_000012_020--Hb_000290_020 Hb_002639_150 Hb_002639_150 Hb_000012_020--Hb_002639_150 Hb_000156_140 Hb_000156_140 Hb_000012_020--Hb_000156_140 Hb_004363_010 Hb_004363_010 Hb_000976_260--Hb_004363_010 Hb_000976_260--Hb_000261_250 Hb_000661_140 Hb_000661_140 Hb_000976_260--Hb_000661_140 Hb_000976_260--Hb_002639_150 Hb_003091_010 Hb_003091_010 Hb_011848_010--Hb_003091_010 Hb_000617_220 Hb_000617_220 Hb_011848_010--Hb_000617_220 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_004450_060 Hb_004450_060 Hb_011848_010--Hb_004450_060 Hb_000359_330 Hb_000359_330 Hb_011848_010--Hb_000359_330 Hb_011848_010--Hb_009222_010 Hb_000394_190 Hb_000394_190 Hb_000261_250--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_000261_250--Hb_002192_080 Hb_000261_250--Hb_000359_330 Hb_003849_060 Hb_003849_060 Hb_000261_250--Hb_003849_060 Hb_106552_050 Hb_106552_050 Hb_000261_250--Hb_106552_050 Hb_000785_030 Hb_000785_030 Hb_009222_010--Hb_000785_030 Hb_000189_340 Hb_000189_340 Hb_009222_010--Hb_000189_340 Hb_000059_140 Hb_000059_140 Hb_009222_010--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_009222_010--Hb_011942_080 Hb_009222_010--Hb_003467_010 Hb_003467_010--Hb_004450_060 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_003467_010--Hb_011942_080 Hb_003467_010--Hb_003849_060 Hb_007632_110 Hb_007632_110 Hb_003467_010--Hb_007632_110 Hb_003467_010--Hb_000394_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
126.172 58.9238 107.178 45.3324 122.586 157.844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.1958 98.4897 39.7203 37.4261 25.8466

CAGE analysis