Hb_000976_260

Information

Type -
Description -
Location Contig976: 214826-216048
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64075: 215141-216657
cDNA
(Sanger)
(ID:Location)		 004_A03.ab1: 215143-215371 , 019_P16.ab1: 215177-216657 , 031_A19.ab1: 215180-216609 , 033_N04.ab1: 215147-216631 , 044_B19.ab1: 215141-216631 , 046_H23.ab1: 215146-216637

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_260 0.0 - - -
2 Hb_001142_050 0.0683904264 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
3 Hb_000012_020 0.0853580042 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
4 Hb_004363_010 0.0860752842 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
5 Hb_000261_250 0.0917326132 - - elongation factor 1-alpha [Lepidium sativum]
6 Hb_000661_140 0.0958447044 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
7 Hb_002639_150 0.1018351873 - - -
8 Hb_001373_110 0.1034041477 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
9 Hb_000175_090 0.1046575649 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011013_010 0.1059465837 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
11 Hb_003050_200 0.107674871 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
12 Hb_022132_010 0.1094086741 - - unknown [Medicago truncatula]
13 Hb_005085_020 0.1106218986 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
14 Hb_001195_260 0.1117654826 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
15 Hb_004785_190 0.1133296732 - - PHD finger family protein [Populus trichocarpa]
16 Hb_002192_080 0.113515948 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
17 Hb_000390_130 0.1137394818 - - PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]
18 Hb_003142_070 0.1139498526 - - hypothetical protein F383_14657 [Gossypium arboreum]
19 Hb_000926_180 0.1144104339 - - proline synthetase associated protein, putative [Ricinus communis]
20 Hb_141532_010 0.1150381619 - - PREDICTED: protein SMG9-like [Jatropha curcas]

Gene co-expression network

sample Hb_000976_260 Hb_000976_260 Hb_001142_050 Hb_001142_050 Hb_000976_260--Hb_001142_050 Hb_000012_020 Hb_000012_020 Hb_000976_260--Hb_000012_020 Hb_004363_010 Hb_004363_010 Hb_000976_260--Hb_004363_010 Hb_000261_250 Hb_000261_250 Hb_000976_260--Hb_000261_250 Hb_000661_140 Hb_000661_140 Hb_000976_260--Hb_000661_140 Hb_002639_150 Hb_002639_150 Hb_000976_260--Hb_002639_150 Hb_001142_050--Hb_000012_020 Hb_011848_010 Hb_011848_010 Hb_001142_050--Hb_011848_010 Hb_001142_050--Hb_000261_250 Hb_009222_010 Hb_009222_010 Hb_001142_050--Hb_009222_010 Hb_003467_010 Hb_003467_010 Hb_001142_050--Hb_003467_010 Hb_003044_100 Hb_003044_100 Hb_000012_020--Hb_003044_100 Hb_000290_020 Hb_000290_020 Hb_000012_020--Hb_000290_020 Hb_000012_020--Hb_002639_150 Hb_000156_140 Hb_000156_140 Hb_000012_020--Hb_000156_140 Hb_002292_010 Hb_002292_010 Hb_004363_010--Hb_002292_010 Hb_003050_200 Hb_003050_200 Hb_004363_010--Hb_003050_200 Hb_008112_040 Hb_008112_040 Hb_004363_010--Hb_008112_040 Hb_007441_210 Hb_007441_210 Hb_004363_010--Hb_007441_210 Hb_007007_050 Hb_007007_050 Hb_004363_010--Hb_007007_050 Hb_000394_190 Hb_000394_190 Hb_000261_250--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_000261_250--Hb_002192_080 Hb_000359_330 Hb_000359_330 Hb_000261_250--Hb_000359_330 Hb_003849_060 Hb_003849_060 Hb_000261_250--Hb_003849_060 Hb_106552_050 Hb_106552_050 Hb_000261_250--Hb_106552_050 Hb_000661_140--Hb_002639_150 Hb_000926_310 Hb_000926_310 Hb_000661_140--Hb_000926_310 Hb_011013_010 Hb_011013_010 Hb_000661_140--Hb_011013_010 Hb_004785_190 Hb_004785_190 Hb_000661_140--Hb_004785_190 Hb_005288_150 Hb_005288_150 Hb_000661_140--Hb_005288_150 Hb_020367_050 Hb_020367_050 Hb_000661_140--Hb_020367_050 Hb_002639_150--Hb_000926_310 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_002639_150--Hb_020367_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.4726 36.5765 86.2523 28.1632 73.8922 101.682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.4857 76.2659 28.1945 12.8818 19.0957

CAGE analysis