Hb_009222_010

Information

Type -
Description -
Location Contig9222: 4167-10064
Sequence    

Annotation

kegg
ID rcu:RCOM_1247510
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_002527727.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q54ED4
description Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1
trembl
ID B9SP08
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1247510 PE=4 SV=1
Gene Ontology
ID GO:0080008
description glutamate-rich wd repeat-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62522: 4237-9907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009222_010 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_000785_030 0.055139497 - - hypothetical protein RCOM_0808030 [Ricinus communis]
3 Hb_011848_010 0.0679167164 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
4 Hb_000189_340 0.0687151055 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
5 Hb_000059_140 0.070665113 - - rnase h, putative [Ricinus communis]
6 Hb_011942_080 0.0731266603 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
7 Hb_003467_010 0.0737869248 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
8 Hb_001142_050 0.0763909789 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
9 Hb_000392_050 0.0778028739 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
10 Hb_003849_060 0.0781068519 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
11 Hb_001357_380 0.0785837622 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000334_270 0.0828270249 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
13 Hb_004450_060 0.0831695787 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
14 Hb_000976_320 0.0835726429 - - UPF0061 protein azo1574 [Morus notabilis]
15 Hb_000959_270 0.0841050982 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
16 Hb_001405_120 0.0842874376 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
17 Hb_178968_100 0.0843154437 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
18 Hb_000803_110 0.084631496 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
19 Hb_105386_010 0.084670605 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
20 Hb_031939_010 0.0848713956 - - Coiled-coil domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009222_010 Hb_009222_010 Hb_000785_030 Hb_000785_030 Hb_009222_010--Hb_000785_030 Hb_011848_010 Hb_011848_010 Hb_009222_010--Hb_011848_010 Hb_000189_340 Hb_000189_340 Hb_009222_010--Hb_000189_340 Hb_000059_140 Hb_000059_140 Hb_009222_010--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_009222_010--Hb_011942_080 Hb_003467_010 Hb_003467_010 Hb_009222_010--Hb_003467_010 Hb_000392_050 Hb_000392_050 Hb_000785_030--Hb_000392_050 Hb_000959_270 Hb_000959_270 Hb_000785_030--Hb_000959_270 Hb_002942_050 Hb_002942_050 Hb_000785_030--Hb_002942_050 Hb_001910_020 Hb_001910_020 Hb_000785_030--Hb_001910_020 Hb_000785_030--Hb_000059_140 Hb_003091_010 Hb_003091_010 Hb_011848_010--Hb_003091_010 Hb_000617_220 Hb_000617_220 Hb_011848_010--Hb_000617_220 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_004450_060 Hb_004450_060 Hb_011848_010--Hb_004450_060 Hb_000359_330 Hb_000359_330 Hb_011848_010--Hb_000359_330 Hb_001766_150 Hb_001766_150 Hb_000189_340--Hb_001766_150 Hb_001047_100 Hb_001047_100 Hb_000189_340--Hb_001047_100 Hb_105386_010 Hb_105386_010 Hb_000189_340--Hb_105386_010 Hb_001358_030 Hb_001358_030 Hb_000189_340--Hb_001358_030 Hb_142439_010 Hb_142439_010 Hb_000189_340--Hb_142439_010 Hb_032278_020 Hb_032278_020 Hb_000059_140--Hb_032278_020 Hb_000334_270 Hb_000334_270 Hb_000059_140--Hb_000334_270 Hb_001357_380 Hb_001357_380 Hb_000059_140--Hb_001357_380 Hb_007520_030 Hb_007520_030 Hb_000059_140--Hb_007520_030 Hb_001486_340 Hb_001486_340 Hb_000059_140--Hb_001486_340 Hb_031939_010 Hb_031939_010 Hb_011942_080--Hb_031939_010 Hb_011942_080--Hb_003467_010 Hb_007336_020 Hb_007336_020 Hb_011942_080--Hb_007336_020 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_011942_080--Hb_001357_380 Hb_012799_110 Hb_012799_110 Hb_011942_080--Hb_012799_110 Hb_003467_010--Hb_004450_060 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_003849_060 Hb_003849_060 Hb_003467_010--Hb_003849_060 Hb_007632_110 Hb_007632_110 Hb_003467_010--Hb_007632_110 Hb_000394_190 Hb_000394_190 Hb_003467_010--Hb_000394_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5715 12.5972 13.5408 10.6326 24.643 29.6998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7997 17.4015 6.33875 10.307 6.64631

CAGE analysis