Hb_003091_010

Information

Type -
Description -
Location Contig3091: 11804-17766
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19520g
description POPTRDRAFT_561357; ubiquitin family protein
nr
ID XP_011033381.1
description PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PCX0
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32659: 11894-17351 , PASA_asmbl_32660: 10761-17667 , PASA_asmbl_32661: 10761-17667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003091_010 0.0 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
2 Hb_000617_220 0.0517206629 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
3 Hb_011848_010 0.055497437 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
4 Hb_004701_030 0.0659248146 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
5 Hb_000359_330 0.0693284501 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004450_060 0.0744685083 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
7 Hb_001754_240 0.0745661041 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
8 Hb_006623_020 0.0750703797 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
9 Hb_000803_110 0.0762944537 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
10 Hb_000920_280 0.0778361811 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
11 Hb_001894_030 0.0797600845 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
12 Hb_003142_070 0.0828760503 - - hypothetical protein F383_14657 [Gossypium arboreum]
13 Hb_000072_140 0.0829843176 - - -
14 Hb_000290_020 0.083302001 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
15 Hb_000088_200 0.0856614903 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
16 Hb_000107_170 0.0856804012 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
17 Hb_001142_050 0.0862155374 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
18 Hb_000211_110 0.0874241588 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
19 Hb_000923_040 0.0887412984 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
20 Hb_023001_020 0.0889781284 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003091_010 Hb_003091_010 Hb_000617_220 Hb_000617_220 Hb_003091_010--Hb_000617_220 Hb_011848_010 Hb_011848_010 Hb_003091_010--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_000359_330 Hb_000359_330 Hb_003091_010--Hb_000359_330 Hb_004450_060 Hb_004450_060 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240 Hb_000617_220--Hb_011848_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_006623_020 Hb_006623_020 Hb_000617_220--Hb_006623_020 Hb_000072_140 Hb_000072_140 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_011848_010--Hb_004450_060 Hb_011848_010--Hb_000359_330 Hb_009222_010 Hb_009222_010 Hb_011848_010--Hb_009222_010 Hb_023001_020 Hb_023001_020 Hb_004701_030--Hb_023001_020 Hb_004656_060 Hb_004656_060 Hb_004701_030--Hb_004656_060 Hb_004678_020 Hb_004678_020 Hb_004701_030--Hb_004678_020 Hb_005895_040 Hb_005895_040 Hb_004701_030--Hb_005895_040 Hb_000104_080 Hb_000104_080 Hb_004701_030--Hb_000104_080 Hb_000808_250 Hb_000808_250 Hb_000359_330--Hb_000808_250 Hb_000394_190 Hb_000394_190 Hb_000359_330--Hb_000394_190 Hb_000359_330--Hb_006623_020 Hb_000359_330--Hb_004450_060 Hb_003467_010 Hb_003467_010 Hb_004450_060--Hb_003467_010 Hb_178968_100 Hb_178968_100 Hb_004450_060--Hb_178968_100 Hb_003849_060 Hb_003849_060 Hb_004450_060--Hb_003849_060 Hb_001754_240--Hb_006623_020 Hb_001754_240--Hb_004701_030 Hb_001754_240--Hb_000617_220 Hb_000923_040 Hb_000923_040 Hb_001754_240--Hb_000923_040 Hb_001754_240--Hb_004656_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0397 19.9696 23.2985 11.9554 51.0659 45.7839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5891 24.4859 12.306 8.1666 6.46016

CAGE analysis