Hb_001754_240

Information

Type -
Description -
Location Contig1754: 150647-155934
Sequence    

Annotation

kegg
ID pop:POPTR_0010s02480g
description POPTRDRAFT_565732; mitochondrial substrate carrier family protein
nr
ID XP_012083912.1
description PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
swissprot
ID Q9HC21
description Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1
trembl
ID A0A067JV02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18861 PE=3 SV=1
Gene Ontology
ID GO:0055085
description mitochondrial thiamine pyrophosphate carrier

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16806: 150739-155838 , PASA_asmbl_16807: 150700-151151 , PASA_asmbl_16808: 154344-154577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_240 0.0 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
2 Hb_003091_010 0.0745661041 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
3 Hb_006623_020 0.0767958397 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
4 Hb_004701_030 0.0788688633 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
5 Hb_000617_220 0.0799949331 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
6 Hb_000923_040 0.0880910171 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
7 Hb_004656_060 0.0912059388 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
8 Hb_000920_280 0.0934057799 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
9 Hb_000359_330 0.0936076341 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004678_020 0.0962100172 - - PREDICTED: protein YIF1B [Jatropha curcas]
11 Hb_000640_220 0.0972619186 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
12 Hb_023001_020 0.0990631839 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
13 Hb_000808_250 0.1024414894 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
14 Hb_001504_150 0.1048672413 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
15 Hb_011848_010 0.1051898444 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
16 Hb_003142_070 0.1053506798 - - hypothetical protein F383_14657 [Gossypium arboreum]
17 Hb_001894_030 0.1055970185 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
18 Hb_008887_050 0.1059410448 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
19 Hb_000072_140 0.1065063981 - - -
20 Hb_001541_260 0.1072124374 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001754_240 Hb_001754_240 Hb_003091_010 Hb_003091_010 Hb_001754_240--Hb_003091_010 Hb_006623_020 Hb_006623_020 Hb_001754_240--Hb_006623_020 Hb_004701_030 Hb_004701_030 Hb_001754_240--Hb_004701_030 Hb_000617_220 Hb_000617_220 Hb_001754_240--Hb_000617_220 Hb_000923_040 Hb_000923_040 Hb_001754_240--Hb_000923_040 Hb_004656_060 Hb_004656_060 Hb_001754_240--Hb_004656_060 Hb_003091_010--Hb_000617_220 Hb_011848_010 Hb_011848_010 Hb_003091_010--Hb_011848_010 Hb_003091_010--Hb_004701_030 Hb_000359_330 Hb_000359_330 Hb_003091_010--Hb_000359_330 Hb_004450_060 Hb_004450_060 Hb_003091_010--Hb_004450_060 Hb_000808_250 Hb_000808_250 Hb_006623_020--Hb_000808_250 Hb_021422_010 Hb_021422_010 Hb_006623_020--Hb_021422_010 Hb_006623_020--Hb_000617_220 Hb_003018_060 Hb_003018_060 Hb_006623_020--Hb_003018_060 Hb_000920_280 Hb_000920_280 Hb_006623_020--Hb_000920_280 Hb_006623_020--Hb_003091_010 Hb_023001_020 Hb_023001_020 Hb_004701_030--Hb_023001_020 Hb_004701_030--Hb_004656_060 Hb_004678_020 Hb_004678_020 Hb_004701_030--Hb_004678_020 Hb_005895_040 Hb_005895_040 Hb_004701_030--Hb_005895_040 Hb_000104_080 Hb_000104_080 Hb_004701_030--Hb_000104_080 Hb_000617_220--Hb_011848_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_000072_140 Hb_000072_140 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_000923_040--Hb_000104_080 Hb_008887_050 Hb_008887_050 Hb_000923_040--Hb_008887_050 Hb_000345_530 Hb_000345_530 Hb_000923_040--Hb_000345_530 Hb_001584_290 Hb_001584_290 Hb_000923_040--Hb_001584_290 Hb_000923_040--Hb_023001_020 Hb_001040_040 Hb_001040_040 Hb_000923_040--Hb_001040_040 Hb_000422_140 Hb_000422_140 Hb_004656_060--Hb_000422_140 Hb_004656_060--Hb_005895_040 Hb_004656_060--Hb_023001_020 Hb_000640_220 Hb_000640_220 Hb_004656_060--Hb_000640_220 Hb_002587_020 Hb_002587_020 Hb_004656_060--Hb_002587_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.7226 15.3276 22.9358 9.65656 60.1629 35.7684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7605 21.821 16.721 8.08374 5.28164

CAGE analysis