Hb_003018_060

Information

Type -
Description -
Location Contig3018: 31792-35375
Sequence    

Annotation

kegg
ID tcc:TCM_000227
description Peptide methionine sulfoxide reductase family protein
nr
ID XP_012065607.1
description PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
swissprot
ID Q9SL43
description Peptide methionine sulfoxide reductase A5 OS=Arabidopsis thaliana GN=MSRA5 PE=2 SV=1
trembl
ID A0A067LPD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06508 PE=3 SV=1
Gene Ontology
ID GO:0008113
description peptide methionine sulfoxide reductase a5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31759: 31826-35198 , PASA_asmbl_31760: 35210-35379
cDNA
(Sanger)
(ID:Location)		 032_J08.ab1: 32058-35095

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_060 0.0 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
2 Hb_021422_010 0.0589897647 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
3 Hb_006960_050 0.0712788191 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
4 Hb_006623_020 0.0737457329 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
5 Hb_106552_050 0.0758389359 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
6 Hb_000640_220 0.0785329956 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
7 Hb_006620_020 0.0799869195 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
8 Hb_009646_030 0.0809553145 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003994_200 0.0818038888 - - PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
10 Hb_000808_250 0.0818892477 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
11 Hb_005656_210 0.0836309033 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
12 Hb_025669_020 0.0846582401 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001983_030 0.0853990187 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
14 Hb_000032_490 0.085532648 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
15 Hb_004055_150 0.0856534143 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003018_130 0.0869592751 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
17 Hb_002367_130 0.0877980843 - - UNC-50 family protein isoform 1 [Theobroma cacao]
18 Hb_000002_490 0.0878535821 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
19 Hb_000923_040 0.0880206618 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
20 Hb_008864_110 0.0886313143 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]

Gene co-expression network

sample Hb_003018_060 Hb_003018_060 Hb_021422_010 Hb_021422_010 Hb_003018_060--Hb_021422_010 Hb_006960_050 Hb_006960_050 Hb_003018_060--Hb_006960_050 Hb_006623_020 Hb_006623_020 Hb_003018_060--Hb_006623_020 Hb_106552_050 Hb_106552_050 Hb_003018_060--Hb_106552_050 Hb_000640_220 Hb_000640_220 Hb_003018_060--Hb_000640_220 Hb_006620_020 Hb_006620_020 Hb_003018_060--Hb_006620_020 Hb_021422_010--Hb_006623_020 Hb_000032_490 Hb_000032_490 Hb_021422_010--Hb_000032_490 Hb_001828_160 Hb_001828_160 Hb_021422_010--Hb_001828_160 Hb_000808_250 Hb_000808_250 Hb_021422_010--Hb_000808_250 Hb_021422_010--Hb_006960_050 Hb_000649_070 Hb_000649_070 Hb_006960_050--Hb_000649_070 Hb_004055_150 Hb_004055_150 Hb_006960_050--Hb_004055_150 Hb_004785_100 Hb_004785_100 Hb_006960_050--Hb_004785_100 Hb_006960_050--Hb_006620_020 Hb_020367_050 Hb_020367_050 Hb_006960_050--Hb_020367_050 Hb_002686_250 Hb_002686_250 Hb_006960_050--Hb_002686_250 Hb_006623_020--Hb_000808_250 Hb_000617_220 Hb_000617_220 Hb_006623_020--Hb_000617_220 Hb_000920_280 Hb_000920_280 Hb_006623_020--Hb_000920_280 Hb_003091_010 Hb_003091_010 Hb_006623_020--Hb_003091_010 Hb_008803_090 Hb_008803_090 Hb_106552_050--Hb_008803_090 Hb_000976_320 Hb_000976_320 Hb_106552_050--Hb_000976_320 Hb_001926_030 Hb_001926_030 Hb_106552_050--Hb_001926_030 Hb_002192_080 Hb_002192_080 Hb_106552_050--Hb_002192_080 Hb_106552_050--Hb_000808_250 Hb_106552_050--Hb_004055_150 Hb_000640_220--Hb_021422_010 Hb_002477_130 Hb_002477_130 Hb_000640_220--Hb_002477_130 Hb_000104_080 Hb_000104_080 Hb_000640_220--Hb_000104_080 Hb_001584_290 Hb_001584_290 Hb_000640_220--Hb_001584_290 Hb_000365_140 Hb_000365_140 Hb_000640_220--Hb_000365_140 Hb_003126_100 Hb_003126_100 Hb_000640_220--Hb_003126_100 Hb_000853_230 Hb_000853_230 Hb_006620_020--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_006620_020--Hb_000879_200 Hb_006620_020--Hb_004055_150 Hb_006620_020--Hb_001926_030 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.277 10.1028 14.331 11.6416 28.5118 18.7463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2072 13.9343 11.5936 6.47525 8.47818

CAGE analysis