Hb_000104_080

Information

Type -
Description -
Location Contig104: 219381-223015
Sequence    

Annotation

kegg
ID vvi:100254937
description WD repeat domain-containing protein 83
nr
ID XP_012075294.1
description PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
swissprot
ID Q5BLX8
description WD repeat domain-containing protein 83 OS=Rattus norvegicus GN=Wdr83 PE=1 SV=1
trembl
ID A0A067KTZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09463 PE=4 SV=1
Gene Ontology
ID GO:0080008
description wd repeat domain-containing protein 83

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01451: 219470-219841 , PASA_asmbl_01453: 219848-222984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000104_080 0.0 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
2 Hb_000923_040 0.0458646187 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
3 Hb_028707_090 0.0588133601 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
4 Hb_001584_290 0.0604082481 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
5 Hb_000236_280 0.0648361586 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
6 Hb_008143_030 0.0662052978 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
7 Hb_023001_020 0.0680835764 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
8 Hb_003006_060 0.0693262832 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
9 Hb_000345_530 0.0718688504 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
10 Hb_000640_220 0.0733144137 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
11 Hb_000343_210 0.0751043409 - - ran-binding protein, putative [Ricinus communis]
12 Hb_000640_020 0.0756797678 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
13 Hb_002675_040 0.0769286133 - - ran-binding protein, putative [Ricinus communis]
14 Hb_004678_060 0.0771058981 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
15 Hb_003656_160 0.0781074135 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
16 Hb_000640_320 0.0782117921 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
17 Hb_004701_030 0.0782585138 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
18 Hb_021422_010 0.078786645 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
19 Hb_002477_130 0.0818950166 - - conserved hypothetical protein [Ricinus communis]
20 Hb_030827_030 0.0827290939 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]

Gene co-expression network

sample Hb_000104_080 Hb_000104_080 Hb_000923_040 Hb_000923_040 Hb_000104_080--Hb_000923_040 Hb_028707_090 Hb_028707_090 Hb_000104_080--Hb_028707_090 Hb_001584_290 Hb_001584_290 Hb_000104_080--Hb_001584_290 Hb_000236_280 Hb_000236_280 Hb_000104_080--Hb_000236_280 Hb_008143_030 Hb_008143_030 Hb_000104_080--Hb_008143_030 Hb_023001_020 Hb_023001_020 Hb_000104_080--Hb_023001_020 Hb_008887_050 Hb_008887_050 Hb_000923_040--Hb_008887_050 Hb_000345_530 Hb_000345_530 Hb_000923_040--Hb_000345_530 Hb_000923_040--Hb_001584_290 Hb_000923_040--Hb_023001_020 Hb_001040_040 Hb_001040_040 Hb_000923_040--Hb_001040_040 Hb_000640_020 Hb_000640_020 Hb_028707_090--Hb_000640_020 Hb_002477_130 Hb_002477_130 Hb_028707_090--Hb_002477_130 Hb_000640_220 Hb_000640_220 Hb_028707_090--Hb_000640_220 Hb_008518_050 Hb_008518_050 Hb_028707_090--Hb_008518_050 Hb_028707_090--Hb_008143_030 Hb_001584_290--Hb_008143_030 Hb_010222_080 Hb_010222_080 Hb_001584_290--Hb_010222_080 Hb_002587_020 Hb_002587_020 Hb_001584_290--Hb_002587_020 Hb_001584_290--Hb_000640_220 Hb_004241_070 Hb_004241_070 Hb_000236_280--Hb_004241_070 Hb_073171_080 Hb_073171_080 Hb_000236_280--Hb_073171_080 Hb_000088_200 Hb_000088_200 Hb_000236_280--Hb_000088_200 Hb_004044_020 Hb_004044_020 Hb_000236_280--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000236_280--Hb_004525_100 Hb_108216_040 Hb_108216_040 Hb_008143_030--Hb_108216_040 Hb_000035_040 Hb_000035_040 Hb_008143_030--Hb_000035_040 Hb_000640_320 Hb_000640_320 Hb_008143_030--Hb_000640_320 Hb_002652_040 Hb_002652_040 Hb_008143_030--Hb_002652_040 Hb_004701_030 Hb_004701_030 Hb_023001_020--Hb_004701_030 Hb_000139_250 Hb_000139_250 Hb_023001_020--Hb_000139_250 Hb_004678_020 Hb_004678_020 Hb_023001_020--Hb_004678_020 Hb_005701_040 Hb_005701_040 Hb_023001_020--Hb_005701_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0883 11.4331 11.4998 7.68222 32.2883 24.0684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4824 9.35922 8.8891 7.46001 7.08491

CAGE analysis