Hb_010222_080

Information

Type -
Description -
Location Contig10222: 76910-78550
Sequence    

Annotation

kegg
ID rcu:RCOM_1429100
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012089183.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
swissprot
ID Q9ZUE9
description Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
trembl
ID A0A067JUE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23438 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at2g06000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01055: 74729-77226 , PASA_asmbl_01056: 76723-77981 , PASA_asmbl_01057: 78282-78808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010222_080 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
2 Hb_001584_290 0.0576802234 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
3 Hb_002942_220 0.0592903034 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
4 Hb_017168_010 0.0678291373 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000139_250 0.0700815332 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
6 Hb_004678_020 0.0711046585 - - PREDICTED: protein YIF1B [Jatropha curcas]
7 Hb_004162_280 0.0724387213 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
8 Hb_001541_020 0.0725834533 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
9 Hb_000034_050 0.0749381546 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
10 Hb_000236_100 0.0766439965 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
11 Hb_000946_120 0.0775422719 - - DNA binding protein, putative [Ricinus communis]
12 Hb_010222_030 0.0781321202 - - PREDICTED: uncharacterized protein LOC105647641 [Jatropha curcas]
13 Hb_001504_160 0.0782129286 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
14 Hb_012132_030 0.0788241601 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
15 Hb_008143_030 0.0794710202 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
16 Hb_144787_030 0.0799164218 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
17 Hb_003656_160 0.0814892249 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
18 Hb_002400_180 0.0816475081 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012654_010 0.0821981366 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
20 Hb_033834_010 0.0831331874 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_010222_080 Hb_010222_080 Hb_001584_290 Hb_001584_290 Hb_010222_080--Hb_001584_290 Hb_002942_220 Hb_002942_220 Hb_010222_080--Hb_002942_220 Hb_017168_010 Hb_017168_010 Hb_010222_080--Hb_017168_010 Hb_000139_250 Hb_000139_250 Hb_010222_080--Hb_000139_250 Hb_004678_020 Hb_004678_020 Hb_010222_080--Hb_004678_020 Hb_004162_280 Hb_004162_280 Hb_010222_080--Hb_004162_280 Hb_008143_030 Hb_008143_030 Hb_001584_290--Hb_008143_030 Hb_000104_080 Hb_000104_080 Hb_001584_290--Hb_000104_080 Hb_002587_020 Hb_002587_020 Hb_001584_290--Hb_002587_020 Hb_000923_040 Hb_000923_040 Hb_001584_290--Hb_000923_040 Hb_000640_220 Hb_000640_220 Hb_001584_290--Hb_000640_220 Hb_002942_220--Hb_000139_250 Hb_002400_180 Hb_002400_180 Hb_002942_220--Hb_002400_180 Hb_002942_220--Hb_004678_020 Hb_002942_220--Hb_017168_010 Hb_144787_030 Hb_144787_030 Hb_002942_220--Hb_144787_030 Hb_000107_100 Hb_000107_100 Hb_017168_010--Hb_000107_100 Hb_000340_510 Hb_000340_510 Hb_017168_010--Hb_000340_510 Hb_002026_110 Hb_002026_110 Hb_017168_010--Hb_002026_110 Hb_012132_030 Hb_012132_030 Hb_017168_010--Hb_012132_030 Hb_023001_020 Hb_023001_020 Hb_000139_250--Hb_023001_020 Hb_000424_010 Hb_000424_010 Hb_000139_250--Hb_000424_010 Hb_012654_010 Hb_012654_010 Hb_000139_250--Hb_012654_010 Hb_000803_300 Hb_000803_300 Hb_000139_250--Hb_000803_300 Hb_000139_250--Hb_144787_030 Hb_005701_040 Hb_005701_040 Hb_004678_020--Hb_005701_040 Hb_000001_180 Hb_000001_180 Hb_004678_020--Hb_000001_180 Hb_003384_030 Hb_003384_030 Hb_004678_020--Hb_003384_030 Hb_004678_020--Hb_023001_020 Hb_004162_280--Hb_144787_030 Hb_175338_020 Hb_175338_020 Hb_004162_280--Hb_175338_020 Hb_001541_020 Hb_001541_020 Hb_004162_280--Hb_001541_020 Hb_000236_100 Hb_000236_100 Hb_004162_280--Hb_000236_100 Hb_000510_310 Hb_000510_310 Hb_004162_280--Hb_000510_310 Hb_004162_280--Hb_000139_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9805 7.83084 4.06468 4.6682 19.989 15.6162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.93215 7.33846 9.31916 4.34894 4.56163

CAGE analysis