Hb_175338_020

Information

Type -
Description -
Location Contig175338: 6586-11846
Sequence    

Annotation

kegg
ID rcu:RCOM_0760530
description hypothetical protein
nr
ID XP_012089730.1
description PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L967
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01506 PE=4 SV=1
Gene Ontology
ID GO:0031047
description suppressor of gene silencing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16772: 6744-6919 , PASA_asmbl_16773: 7216-7418 , PASA_asmbl_16775: 8003-8430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175338_020 0.0 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
2 Hb_004162_280 0.0558538248 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
3 Hb_000227_380 0.062476285 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
4 Hb_000424_010 0.0632004501 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
5 Hb_002652_040 0.0632726649 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
6 Hb_000529_260 0.0702537739 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
7 Hb_007849_020 0.0711992224 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
8 Hb_022408_010 0.0718153739 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
9 Hb_000239_070 0.0721412602 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
10 Hb_007885_070 0.072244225 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
11 Hb_031754_010 0.0735235625 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
12 Hb_001504_160 0.073963396 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
13 Hb_001541_020 0.0744015909 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
14 Hb_004724_360 0.074543658 - - OTU-like cysteine protease family protein [Populus trichocarpa]
15 Hb_147737_010 0.0753823489 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
16 Hb_000331_190 0.0754986716 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
17 Hb_001975_020 0.0765580769 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
18 Hb_020665_030 0.0766035039 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000510_310 0.0770285671 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
20 Hb_000327_310 0.0771363341 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]

Gene co-expression network

sample Hb_175338_020 Hb_175338_020 Hb_004162_280 Hb_004162_280 Hb_175338_020--Hb_004162_280 Hb_000227_380 Hb_000227_380 Hb_175338_020--Hb_000227_380 Hb_000424_010 Hb_000424_010 Hb_175338_020--Hb_000424_010 Hb_002652_040 Hb_002652_040 Hb_175338_020--Hb_002652_040 Hb_000529_260 Hb_000529_260 Hb_175338_020--Hb_000529_260 Hb_007849_020 Hb_007849_020 Hb_175338_020--Hb_007849_020 Hb_144787_030 Hb_144787_030 Hb_004162_280--Hb_144787_030 Hb_001541_020 Hb_001541_020 Hb_004162_280--Hb_001541_020 Hb_000236_100 Hb_000236_100 Hb_004162_280--Hb_000236_100 Hb_000510_310 Hb_000510_310 Hb_004162_280--Hb_000510_310 Hb_000139_250 Hb_000139_250 Hb_004162_280--Hb_000139_250 Hb_003866_020 Hb_003866_020 Hb_000227_380--Hb_003866_020 Hb_000227_380--Hb_007849_020 Hb_000239_070 Hb_000239_070 Hb_000227_380--Hb_000239_070 Hb_000002_440 Hb_000002_440 Hb_000227_380--Hb_000002_440 Hb_001080_270 Hb_001080_270 Hb_000227_380--Hb_001080_270 Hb_000035_040 Hb_000035_040 Hb_000424_010--Hb_000035_040 Hb_000424_010--Hb_002652_040 Hb_002221_050 Hb_002221_050 Hb_000424_010--Hb_002221_050 Hb_000424_010--Hb_000529_260 Hb_000424_010--Hb_000139_250 Hb_002652_040--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_002652_040--Hb_000331_190 Hb_125092_020 Hb_125092_020 Hb_002652_040--Hb_125092_020 Hb_002883_010 Hb_002883_010 Hb_002652_040--Hb_002883_010 Hb_000529_260--Hb_002221_050 Hb_007885_070 Hb_007885_070 Hb_000529_260--Hb_007885_070 Hb_019153_020 Hb_019153_020 Hb_000529_260--Hb_019153_020 Hb_000529_260--Hb_000510_310 Hb_000320_200 Hb_000320_200 Hb_000529_260--Hb_000320_200 Hb_006816_300 Hb_006816_300 Hb_007849_020--Hb_006816_300 Hb_002471_210 Hb_002471_210 Hb_007849_020--Hb_002471_210 Hb_000250_070 Hb_000250_070 Hb_007849_020--Hb_000250_070 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_002291_070 Hb_002291_070 Hb_007849_020--Hb_002291_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4058 13.3624 5.29745 4.55994 23.6138 23.81
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.14915 7.36317 10.7584 9.7399 5.69088

CAGE analysis