Hb_001080_270

Information

Type -
Description -
Location Contig1080: 236670-238238
Sequence    

Annotation

kegg
ID rcu:RCOM_0851770
description ATP binding protein, putative
nr
ID XP_012092222.1
description PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
swissprot
ID Q55ED4
description UPF0396 protein OS=Dictyostelium discoideum GN=DDB_G0269284 PE=3 SV=1
trembl
ID A0A067JC70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21917 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02438: 236631-238367 , PASA_asmbl_02439: 236631-242972 , PASA_asmbl_02440: 236631-242972 , PASA_asmbl_02441: 238173-240816
cDNA
(Sanger)
(ID:Location)		 046_N15.ab1: 236631-237395

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_270 0.0 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
2 Hb_000227_380 0.0724337409 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
3 Hb_004718_010 0.0747494609 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
4 Hb_002411_120 0.0754062673 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
5 Hb_000997_030 0.0774018339 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
6 Hb_000959_040 0.0777701249 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
7 Hb_000813_100 0.078577775 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
8 Hb_002813_010 0.0792623216 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
9 Hb_002471_210 0.0813486476 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
10 Hb_000529_260 0.082438129 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
11 Hb_007885_070 0.0826321359 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
12 Hb_000363_130 0.0831686994 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
13 Hb_015475_020 0.0833448663 - - importin beta-1, putative [Ricinus communis]
14 Hb_000264_100 0.0834233842 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000120_610 0.0846829196 - - mitotic control protein dis3, putative [Ricinus communis]
16 Hb_004543_030 0.0847369808 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
17 Hb_004659_080 0.0852256297 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
18 Hb_000313_340 0.0863098221 - - DNA repair protein xp-E, putative [Ricinus communis]
19 Hb_001221_160 0.0866688816 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
20 Hb_000594_020 0.0868258074 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001080_270 Hb_001080_270 Hb_000227_380 Hb_000227_380 Hb_001080_270--Hb_000227_380 Hb_004718_010 Hb_004718_010 Hb_001080_270--Hb_004718_010 Hb_002411_120 Hb_002411_120 Hb_001080_270--Hb_002411_120 Hb_000997_030 Hb_000997_030 Hb_001080_270--Hb_000997_030 Hb_000959_040 Hb_000959_040 Hb_001080_270--Hb_000959_040 Hb_000813_100 Hb_000813_100 Hb_001080_270--Hb_000813_100 Hb_003866_020 Hb_003866_020 Hb_000227_380--Hb_003866_020 Hb_007849_020 Hb_007849_020 Hb_000227_380--Hb_007849_020 Hb_175338_020 Hb_175338_020 Hb_000227_380--Hb_175338_020 Hb_000239_070 Hb_000239_070 Hb_000227_380--Hb_000239_070 Hb_000002_440 Hb_000002_440 Hb_000227_380--Hb_000002_440 Hb_010578_060 Hb_010578_060 Hb_004718_010--Hb_010578_060 Hb_004718_010--Hb_000959_040 Hb_001268_350 Hb_001268_350 Hb_004718_010--Hb_001268_350 Hb_004543_030 Hb_004543_030 Hb_004718_010--Hb_004543_030 Hb_002301_080 Hb_002301_080 Hb_004718_010--Hb_002301_080 Hb_000594_020 Hb_000594_020 Hb_002411_120--Hb_000594_020 Hb_009151_020 Hb_009151_020 Hb_002411_120--Hb_009151_020 Hb_020665_030 Hb_020665_030 Hb_002411_120--Hb_020665_030 Hb_002499_070 Hb_002499_070 Hb_002411_120--Hb_002499_070 Hb_004899_070 Hb_004899_070 Hb_002411_120--Hb_004899_070 Hb_000264_100 Hb_000264_100 Hb_000997_030--Hb_000264_100 Hb_030565_090 Hb_030565_090 Hb_000997_030--Hb_030565_090 Hb_000997_030--Hb_000813_100 Hb_000107_040 Hb_000107_040 Hb_000997_030--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_000997_030--Hb_000023_060 Hb_034243_020 Hb_034243_020 Hb_000997_030--Hb_034243_020 Hb_007676_100 Hb_007676_100 Hb_000959_040--Hb_007676_100 Hb_002188_110 Hb_002188_110 Hb_000959_040--Hb_002188_110 Hb_183963_030 Hb_183963_030 Hb_000959_040--Hb_183963_030 Hb_000959_040--Hb_010578_060 Hb_018133_050 Hb_018133_050 Hb_000959_040--Hb_018133_050 Hb_000813_100--Hb_000594_020 Hb_000813_100--Hb_004899_070 Hb_147737_010 Hb_147737_010 Hb_000813_100--Hb_147737_010 Hb_000813_100--Hb_000002_440 Hb_001946_300 Hb_001946_300 Hb_000813_100--Hb_001946_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
108.515 126.184 24.3692 39.7519 157.108 132.488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.9453 42.8405 47.8648 61.8906 47.3396

CAGE analysis