Hb_002188_110

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2188: 135521-145933
Sequence    

Annotation

kegg
ID rcu:RCOM_1429720
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002512305.1
description phosphoprotein phosphatase, putative [Ricinus communis]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID B9REY6
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_1429720 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22549: 139747-140663 , PASA_asmbl_22550: 143539-143836 , PASA_asmbl_22551: 144655-144772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002188_110 0.0 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
2 Hb_183963_030 0.042142318 - - DNA binding protein, putative [Ricinus communis]
3 Hb_000025_360 0.0597012123 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
4 Hb_000959_040 0.0607405628 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
5 Hb_007676_100 0.06610184 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
6 Hb_000441_070 0.0694002408 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
7 Hb_001247_070 0.0697151922 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
8 Hb_000046_010 0.0699566492 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
9 Hb_010578_060 0.0718441683 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
10 Hb_004718_010 0.0784008794 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
11 Hb_001967_030 0.0798134191 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
12 Hb_000796_030 0.0817146331 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
13 Hb_001718_090 0.0817235887 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
14 Hb_004128_050 0.0870868245 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
15 Hb_003467_020 0.0873251242 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 13-like [Jatropha curcas]
16 Hb_006649_060 0.0875798921 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000174_220 0.0892284653 - - cohesin subunit rad21, putative [Ricinus communis]
18 Hb_002890_090 0.0895781273 - - Auxin response factor 1 [Glycine soja]
19 Hb_045793_010 0.0895782902 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
20 Hb_003785_040 0.0895909518 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002188_110 Hb_002188_110 Hb_183963_030 Hb_183963_030 Hb_002188_110--Hb_183963_030 Hb_000025_360 Hb_000025_360 Hb_002188_110--Hb_000025_360 Hb_000959_040 Hb_000959_040 Hb_002188_110--Hb_000959_040 Hb_007676_100 Hb_007676_100 Hb_002188_110--Hb_007676_100 Hb_000441_070 Hb_000441_070 Hb_002188_110--Hb_000441_070 Hb_001247_070 Hb_001247_070 Hb_002188_110--Hb_001247_070 Hb_183963_030--Hb_000025_360 Hb_183963_030--Hb_000959_040 Hb_010578_060 Hb_010578_060 Hb_183963_030--Hb_010578_060 Hb_004128_050 Hb_004128_050 Hb_183963_030--Hb_004128_050 Hb_183963_030--Hb_001247_070 Hb_045793_010 Hb_045793_010 Hb_000025_360--Hb_045793_010 Hb_000046_010 Hb_000046_010 Hb_000025_360--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000025_360--Hb_001718_090 Hb_000107_500 Hb_000107_500 Hb_000025_360--Hb_000107_500 Hb_000959_040--Hb_007676_100 Hb_004718_010 Hb_004718_010 Hb_000959_040--Hb_004718_010 Hb_000959_040--Hb_010578_060 Hb_018133_050 Hb_018133_050 Hb_000959_040--Hb_018133_050 Hb_004659_080 Hb_004659_080 Hb_007676_100--Hb_004659_080 Hb_006252_020 Hb_006252_020 Hb_007676_100--Hb_006252_020 Hb_000331_330 Hb_000331_330 Hb_007676_100--Hb_000331_330 Hb_007676_100--Hb_004128_050 Hb_000441_070--Hb_000046_010 Hb_000441_070--Hb_001718_090 Hb_000322_150 Hb_000322_150 Hb_000441_070--Hb_000322_150 Hb_004480_040 Hb_004480_040 Hb_000441_070--Hb_004480_040 Hb_076693_020 Hb_076693_020 Hb_000441_070--Hb_076693_020 Hb_000169_130 Hb_000169_130 Hb_000441_070--Hb_000169_130 Hb_000139_090 Hb_000139_090 Hb_001247_070--Hb_000139_090 Hb_001268_350 Hb_001268_350 Hb_001247_070--Hb_001268_350 Hb_124315_020 Hb_124315_020 Hb_001247_070--Hb_124315_020 Hb_001930_010 Hb_001930_010 Hb_001247_070--Hb_001930_010 Hb_000174_220 Hb_000174_220 Hb_001247_070--Hb_000174_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02156 3.25376 0.695357 0.953777 3.07385 2.80149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11671 1.50179 2.01947 1.46714 1.14107

CAGE analysis