Hb_001268_350

Information

Type -
Description -
Location Contig1268: 327189-338452
Sequence    

Annotation

kegg
ID vvi:100256726
description uncharacterized LOC100256726
nr
ID XP_011011193.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067L063
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26815 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08128: 331979-332224 , PASA_asmbl_08129: 333234-333832 , PASA_asmbl_08130: 333942-334360 , PASA_asmbl_08131: 336386-336579 , PASA_asmbl_08132: 337485-338014 , PASA_asmbl_08133: 338154-338287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_350 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
2 Hb_004718_010 0.063040717 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
3 Hb_000035_290 0.0658427728 - - RNA recognition motif-containing family protein [Populus trichocarpa]
4 Hb_001247_070 0.0676073372 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
5 Hb_002784_110 0.0713390789 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
6 Hb_005699_090 0.0723040669 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
7 Hb_014267_010 0.0749558488 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
8 Hb_004602_040 0.0776239986 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
9 Hb_012656_030 0.0779017253 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
10 Hb_007576_120 0.0808765284 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
11 Hb_003952_150 0.0811235565 - - PREDICTED: cactin [Jatropha curcas]
12 Hb_004543_030 0.0825467784 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
13 Hb_000327_340 0.0828323069 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
14 Hb_025194_040 0.0830742168 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
15 Hb_001913_060 0.0832675557 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
16 Hb_010578_060 0.0844333527 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
17 Hb_005496_110 0.0846741267 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
18 Hb_002107_070 0.0847252116 - - hypothetical protein RCOM_1598630 [Ricinus communis]
19 Hb_002301_080 0.0848230642 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
20 Hb_004218_030 0.084838182 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001268_350 Hb_001268_350 Hb_004718_010 Hb_004718_010 Hb_001268_350--Hb_004718_010 Hb_000035_290 Hb_000035_290 Hb_001268_350--Hb_000035_290 Hb_001247_070 Hb_001247_070 Hb_001268_350--Hb_001247_070 Hb_002784_110 Hb_002784_110 Hb_001268_350--Hb_002784_110 Hb_005699_090 Hb_005699_090 Hb_001268_350--Hb_005699_090 Hb_014267_010 Hb_014267_010 Hb_001268_350--Hb_014267_010 Hb_010578_060 Hb_010578_060 Hb_004718_010--Hb_010578_060 Hb_000959_040 Hb_000959_040 Hb_004718_010--Hb_000959_040 Hb_004543_030 Hb_004543_030 Hb_004718_010--Hb_004543_030 Hb_002301_080 Hb_002301_080 Hb_004718_010--Hb_002301_080 Hb_001080_270 Hb_001080_270 Hb_004718_010--Hb_001080_270 Hb_000166_130 Hb_000166_130 Hb_000035_290--Hb_000166_130 Hb_000343_120 Hb_000343_120 Hb_000035_290--Hb_000343_120 Hb_025194_040 Hb_025194_040 Hb_000035_290--Hb_025194_040 Hb_005496_110 Hb_005496_110 Hb_000035_290--Hb_005496_110 Hb_000395_130 Hb_000395_130 Hb_000035_290--Hb_000395_130 Hb_000035_290--Hb_002784_110 Hb_000139_090 Hb_000139_090 Hb_001247_070--Hb_000139_090 Hb_124315_020 Hb_124315_020 Hb_001247_070--Hb_124315_020 Hb_001930_010 Hb_001930_010 Hb_001247_070--Hb_001930_010 Hb_002188_110 Hb_002188_110 Hb_001247_070--Hb_002188_110 Hb_000174_220 Hb_000174_220 Hb_001247_070--Hb_000174_220 Hb_000446_120 Hb_000446_120 Hb_002784_110--Hb_000446_120 Hb_002784_110--Hb_025194_040 Hb_001913_060 Hb_001913_060 Hb_002784_110--Hb_001913_060 Hb_000788_070 Hb_000788_070 Hb_002784_110--Hb_000788_070 Hb_000183_020 Hb_000183_020 Hb_002784_110--Hb_000183_020 Hb_005699_090--Hb_000035_290 Hb_000563_640 Hb_000563_640 Hb_005699_090--Hb_000563_640 Hb_005699_090--Hb_002784_110 Hb_003544_180 Hb_003544_180 Hb_005699_090--Hb_003544_180 Hb_005699_090--Hb_025194_040 Hb_012656_030 Hb_012656_030 Hb_014267_010--Hb_012656_030 Hb_000318_390 Hb_000318_390 Hb_014267_010--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_014267_010--Hb_001967_030 Hb_000796_030 Hb_000796_030 Hb_014267_010--Hb_000796_030 Hb_004228_010 Hb_004228_010 Hb_014267_010--Hb_004228_010 Hb_010417_050 Hb_010417_050 Hb_014267_010--Hb_010417_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42231 6.31841 1.43638 1.9035 6.59355 6.37158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.24983 2.85189 4.28858 5.15279 4.24424

CAGE analysis