Hb_001967_030

Information

Type -
Description -
Location Contig1967: 30053-38622
Sequence    

Annotation

kegg
ID rcu:RCOM_1405990
description hypothetical protein
nr
ID XP_012071570.1
description PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
swissprot
ID Q7S055
description Autophagy-related protein 11 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=apg-8 PE=3 SV=2
trembl
ID A0A067KRK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04075 PE=4 SV=1
Gene Ontology
ID GO:0009506
description autophagy-related protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19721: 30041-31240 , PASA_asmbl_19722: 31872-34135 , PASA_asmbl_19723: 34166-37284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001967_030 0.0 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
2 Hb_000540_060 0.0605421913 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
3 Hb_014267_010 0.0618192783 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
4 Hb_000960_100 0.075060117 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
5 Hb_000890_050 0.0751301469 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
6 Hb_183963_030 0.0762788663 - - DNA binding protein, putative [Ricinus communis]
7 Hb_000321_150 0.0766958449 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
8 Hb_000977_120 0.07732605 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
9 Hb_018133_050 0.0785374146 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
10 Hb_001247_070 0.0785440666 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
11 Hb_003729_030 0.0785544716 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
12 Hb_006637_050 0.0785834607 - - PREDICTED: ethylene-insensitive protein 2 [Jatropha curcas]
13 Hb_002188_110 0.0798134191 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
14 Hb_000174_220 0.0803807757 - - cohesin subunit rad21, putative [Ricinus communis]
15 Hb_000035_290 0.0805837961 - - RNA recognition motif-containing family protein [Populus trichocarpa]
16 Hb_009851_070 0.0809625213 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]
17 Hb_002701_040 0.0810759 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
18 Hb_025194_040 0.0810927068 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
19 Hb_009767_080 0.0818873502 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
20 Hb_002235_300 0.0831024916 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001967_030 Hb_001967_030 Hb_000540_060 Hb_000540_060 Hb_001967_030--Hb_000540_060 Hb_014267_010 Hb_014267_010 Hb_001967_030--Hb_014267_010 Hb_000960_100 Hb_000960_100 Hb_001967_030--Hb_000960_100 Hb_000890_050 Hb_000890_050 Hb_001967_030--Hb_000890_050 Hb_183963_030 Hb_183963_030 Hb_001967_030--Hb_183963_030 Hb_000321_150 Hb_000321_150 Hb_001967_030--Hb_000321_150 Hb_025194_040 Hb_025194_040 Hb_000540_060--Hb_025194_040 Hb_002784_110 Hb_002784_110 Hb_000540_060--Hb_002784_110 Hb_007576_120 Hb_007576_120 Hb_000540_060--Hb_007576_120 Hb_005496_110 Hb_005496_110 Hb_000540_060--Hb_005496_110 Hb_001472_090 Hb_001472_090 Hb_000540_060--Hb_001472_090 Hb_012656_030 Hb_012656_030 Hb_014267_010--Hb_012656_030 Hb_000318_390 Hb_000318_390 Hb_014267_010--Hb_000318_390 Hb_000796_030 Hb_000796_030 Hb_014267_010--Hb_000796_030 Hb_004228_010 Hb_004228_010 Hb_014267_010--Hb_004228_010 Hb_010417_050 Hb_010417_050 Hb_014267_010--Hb_010417_050 Hb_002615_090 Hb_002615_090 Hb_000960_100--Hb_002615_090 Hb_004108_100 Hb_004108_100 Hb_000960_100--Hb_004108_100 Hb_002022_070 Hb_002022_070 Hb_000960_100--Hb_002022_070 Hb_000025_320 Hb_000025_320 Hb_000960_100--Hb_000025_320 Hb_002235_300 Hb_002235_300 Hb_000960_100--Hb_002235_300 Hb_001235_230 Hb_001235_230 Hb_000960_100--Hb_001235_230 Hb_009767_080 Hb_009767_080 Hb_000890_050--Hb_009767_080 Hb_004143_130 Hb_004143_130 Hb_000890_050--Hb_004143_130 Hb_000270_670 Hb_000270_670 Hb_000890_050--Hb_000270_670 Hb_015807_070 Hb_015807_070 Hb_000890_050--Hb_015807_070 Hb_000890_050--Hb_000318_390 Hb_002188_110 Hb_002188_110 Hb_183963_030--Hb_002188_110 Hb_000025_360 Hb_000025_360 Hb_183963_030--Hb_000025_360 Hb_000959_040 Hb_000959_040 Hb_183963_030--Hb_000959_040 Hb_010578_060 Hb_010578_060 Hb_183963_030--Hb_010578_060 Hb_004128_050 Hb_004128_050 Hb_183963_030--Hb_004128_050 Hb_001247_070 Hb_001247_070 Hb_183963_030--Hb_001247_070 Hb_003729_030 Hb_003729_030 Hb_000321_150--Hb_003729_030 Hb_006117_080 Hb_006117_080 Hb_000321_150--Hb_006117_080 Hb_000069_470 Hb_000069_470 Hb_000321_150--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_000321_150--Hb_000661_130 Hb_000321_150--Hb_009767_080 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.88063 16.1543 3.29849 5.5734 11.4455 11.748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.15487 5.1108 10.6598 7.71509 8.31539

CAGE analysis