Hb_000796_030

Information

Type -
Description -
Location Contig796: 14131-16245
Sequence    

Annotation

kegg
ID cit:102610187
description pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like
nr
ID XP_012082955.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
swissprot
ID Q680H3
description Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2
trembl
ID A0A067JWG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14072 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58538: 14034-17309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
2 Hb_009503_030 0.0568990905 - - protein dimerization, putative [Ricinus communis]
3 Hb_000780_230 0.0573475173 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
4 Hb_002025_020 0.0645984468 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
5 Hb_003029_110 0.0654852516 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
6 Hb_014267_010 0.0656904947 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
7 Hb_009545_100 0.0658755074 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
8 Hb_004128_050 0.0664685133 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
9 Hb_009851_070 0.0671616513 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]
10 Hb_003785_040 0.0673534228 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
11 Hb_000035_290 0.0690867153 - - RNA recognition motif-containing family protein [Populus trichocarpa]
12 Hb_000343_120 0.0699821156 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
13 Hb_006420_040 0.0705664086 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
14 Hb_005731_030 0.0711693278 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
15 Hb_001550_060 0.0735093589 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
16 Hb_000166_130 0.073782071 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000514_060 0.0758642485 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
18 Hb_183963_030 0.0767386084 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000190_120 0.0779218733 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
20 Hb_123352_020 0.0802903454 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]

Gene co-expression network

sample Hb_000796_030 Hb_000796_030 Hb_009503_030 Hb_009503_030 Hb_000796_030--Hb_009503_030 Hb_000780_230 Hb_000780_230 Hb_000796_030--Hb_000780_230 Hb_002025_020 Hb_002025_020 Hb_000796_030--Hb_002025_020 Hb_003029_110 Hb_003029_110 Hb_000796_030--Hb_003029_110 Hb_014267_010 Hb_014267_010 Hb_000796_030--Hb_014267_010 Hb_009545_100 Hb_009545_100 Hb_000796_030--Hb_009545_100 Hb_003785_040 Hb_003785_040 Hb_009503_030--Hb_003785_040 Hb_000574_440 Hb_000574_440 Hb_009503_030--Hb_000574_440 Hb_006420_040 Hb_006420_040 Hb_009503_030--Hb_006420_040 Hb_009503_030--Hb_009545_100 Hb_000502_050 Hb_000502_050 Hb_009503_030--Hb_000502_050 Hb_000152_380 Hb_000152_380 Hb_000780_230--Hb_000152_380 Hb_000780_230--Hb_002025_020 Hb_013399_100 Hb_013399_100 Hb_000780_230--Hb_013399_100 Hb_001409_020 Hb_001409_020 Hb_000780_230--Hb_001409_020 Hb_000366_120 Hb_000366_120 Hb_000780_230--Hb_000366_120 Hb_000347_070 Hb_000347_070 Hb_002025_020--Hb_000347_070 Hb_002025_020--Hb_009545_100 Hb_003158_010 Hb_003158_010 Hb_002025_020--Hb_003158_010 Hb_002835_370 Hb_002835_370 Hb_002025_020--Hb_002835_370 Hb_004221_020 Hb_004221_020 Hb_002025_020--Hb_004221_020 Hb_000166_130 Hb_000166_130 Hb_003029_110--Hb_000166_130 Hb_001195_320 Hb_001195_320 Hb_003029_110--Hb_001195_320 Hb_005731_030 Hb_005731_030 Hb_003029_110--Hb_005731_030 Hb_000343_120 Hb_000343_120 Hb_003029_110--Hb_000343_120 Hb_010222_050 Hb_010222_050 Hb_003029_110--Hb_010222_050 Hb_003371_110 Hb_003371_110 Hb_003029_110--Hb_003371_110 Hb_012656_030 Hb_012656_030 Hb_014267_010--Hb_012656_030 Hb_000318_390 Hb_000318_390 Hb_014267_010--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_014267_010--Hb_001967_030 Hb_004228_010 Hb_004228_010 Hb_014267_010--Hb_004228_010 Hb_010417_050 Hb_010417_050 Hb_014267_010--Hb_010417_050 Hb_009545_100--Hb_000343_120 Hb_009545_100--Hb_000347_070 Hb_000116_500 Hb_000116_500 Hb_009545_100--Hb_000116_500 Hb_009545_100--Hb_003029_110 Hb_000225_040 Hb_000225_040 Hb_009545_100--Hb_000225_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.74734 11.0035 4.53496 5.52084 13.929 10.9815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.19482 6.77737 9.85915 6.96969 7.24361

CAGE analysis