Hb_012656_030

Information

Type transcription factor
Description TF Family: PHD
Location Contig12656: 21502-47602
Sequence    

Annotation

kegg
ID rcu:RCOM_0893560
description chromodomain helicase DNA binding protein, putative (EC:2.7.11.1)
nr
ID XP_012080909.1
description PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
swissprot
ID F4KBP5
description Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana GN=CHR4 PE=2 SV=1
trembl
ID A0A067K2V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15265 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein chromatin remodeling 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08011: 22074-25362 , PASA_asmbl_08012: 25704-26840 , PASA_asmbl_08013: 27246-47604 , PASA_asmbl_08014: 40783-41222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012656_030 0.0 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
2 Hb_008500_010 0.0593265494 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
3 Hb_014267_010 0.06027381 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
4 Hb_000318_390 0.0617791299 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
5 Hb_000035_290 0.0697185285 - - RNA recognition motif-containing family protein [Populus trichocarpa]
6 Hb_001268_350 0.0779017253 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
7 Hb_003440_050 0.0785734133 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
8 Hb_001700_040 0.0785756618 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
9 Hb_000890_050 0.078907893 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
10 Hb_000101_240 0.0794149485 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
11 Hb_000291_050 0.0801239004 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
12 Hb_004724_060 0.0809216354 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
13 Hb_015807_070 0.0812472357 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
14 Hb_004143_130 0.0824479894 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
15 Hb_003938_080 0.082642569 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
16 Hb_001584_150 0.0831739382 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
17 Hb_006316_040 0.0840069243 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
18 Hb_001247_070 0.0855030333 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
19 Hb_000343_120 0.0861240133 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
20 Hb_001199_100 0.0862027136 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]

Gene co-expression network

sample Hb_012656_030 Hb_012656_030 Hb_008500_010 Hb_008500_010 Hb_012656_030--Hb_008500_010 Hb_014267_010 Hb_014267_010 Hb_012656_030--Hb_014267_010 Hb_000318_390 Hb_000318_390 Hb_012656_030--Hb_000318_390 Hb_000035_290 Hb_000035_290 Hb_012656_030--Hb_000035_290 Hb_001268_350 Hb_001268_350 Hb_012656_030--Hb_001268_350 Hb_003440_050 Hb_003440_050 Hb_012656_030--Hb_003440_050 Hb_006316_040 Hb_006316_040 Hb_008500_010--Hb_006316_040 Hb_001584_150 Hb_001584_150 Hb_008500_010--Hb_001584_150 Hb_004724_060 Hb_004724_060 Hb_008500_010--Hb_004724_060 Hb_015807_070 Hb_015807_070 Hb_008500_010--Hb_015807_070 Hb_002311_040 Hb_002311_040 Hb_008500_010--Hb_002311_040 Hb_014267_010--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_014267_010--Hb_001967_030 Hb_000796_030 Hb_000796_030 Hb_014267_010--Hb_000796_030 Hb_004228_010 Hb_004228_010 Hb_014267_010--Hb_004228_010 Hb_010417_050 Hb_010417_050 Hb_014267_010--Hb_010417_050 Hb_000890_050 Hb_000890_050 Hb_000318_390--Hb_000890_050 Hb_000803_260 Hb_000803_260 Hb_000318_390--Hb_000803_260 Hb_001205_230 Hb_001205_230 Hb_000318_390--Hb_001205_230 Hb_000318_390--Hb_003440_050 Hb_000166_130 Hb_000166_130 Hb_000035_290--Hb_000166_130 Hb_000343_120 Hb_000343_120 Hb_000035_290--Hb_000343_120 Hb_025194_040 Hb_025194_040 Hb_000035_290--Hb_025194_040 Hb_005496_110 Hb_005496_110 Hb_000035_290--Hb_005496_110 Hb_000395_130 Hb_000395_130 Hb_000035_290--Hb_000395_130 Hb_002784_110 Hb_002784_110 Hb_000035_290--Hb_002784_110 Hb_004718_010 Hb_004718_010 Hb_001268_350--Hb_004718_010 Hb_001268_350--Hb_000035_290 Hb_001247_070 Hb_001247_070 Hb_001268_350--Hb_001247_070 Hb_001268_350--Hb_002784_110 Hb_005699_090 Hb_005699_090 Hb_001268_350--Hb_005699_090 Hb_001268_350--Hb_014267_010 Hb_000174_220 Hb_000174_220 Hb_003440_050--Hb_000174_220 Hb_003440_050--Hb_000803_260 Hb_000041_090 Hb_000041_090 Hb_003440_050--Hb_000041_090 Hb_000139_090 Hb_000139_090 Hb_003440_050--Hb_000139_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2737 15.4599 5.04916 5.64198 14.3336 18.5418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.52657 10.8457 16.0481 12.1734 13.0012

CAGE analysis