Hb_006316_040

Information

Type -
Description -
Location Contig6316: 60144-62702
Sequence    

Annotation

kegg
ID pmum:103338981
description pentatricopeptide repeat-containing protein At5g16860
nr
ID XP_012066313.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
swissprot
ID Q9LFL5
description Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
trembl
ID A0A067L3C6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23869 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51852: 61928-62406
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006316_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
2 Hb_008500_010 0.0439028131 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
3 Hb_000453_170 0.0603470728 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_011316_050 0.0632448451 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
5 Hb_000827_070 0.0675707004 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
6 Hb_010172_090 0.0743424186 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_005188_050 0.0754719398 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
8 Hb_001584_150 0.0771245827 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
9 Hb_004684_010 0.0798954253 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
10 Hb_004724_060 0.0810574361 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
11 Hb_001818_070 0.0814914086 - - carbon catabolite repressor protein, putative [Ricinus communis]
12 Hb_002496_030 0.0837430994 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
13 Hb_012656_030 0.0840069243 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
14 Hb_001507_020 0.0848760738 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
15 Hb_015807_070 0.0857369819 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
16 Hb_120327_010 0.0859499603 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
17 Hb_002477_030 0.0859815249 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
18 Hb_000289_060 0.0867619026 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
19 Hb_002810_020 0.0873708895 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
20 Hb_045793_010 0.087496554 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_006316_040 Hb_006316_040 Hb_008500_010 Hb_008500_010 Hb_006316_040--Hb_008500_010 Hb_000453_170 Hb_000453_170 Hb_006316_040--Hb_000453_170 Hb_011316_050 Hb_011316_050 Hb_006316_040--Hb_011316_050 Hb_000827_070 Hb_000827_070 Hb_006316_040--Hb_000827_070 Hb_010172_090 Hb_010172_090 Hb_006316_040--Hb_010172_090 Hb_005188_050 Hb_005188_050 Hb_006316_040--Hb_005188_050 Hb_001584_150 Hb_001584_150 Hb_008500_010--Hb_001584_150 Hb_012656_030 Hb_012656_030 Hb_008500_010--Hb_012656_030 Hb_004724_060 Hb_004724_060 Hb_008500_010--Hb_004724_060 Hb_015807_070 Hb_015807_070 Hb_008500_010--Hb_015807_070 Hb_002311_040 Hb_002311_040 Hb_008500_010--Hb_002311_040 Hb_000453_170--Hb_011316_050 Hb_002496_030 Hb_002496_030 Hb_000453_170--Hb_002496_030 Hb_004221_020 Hb_004221_020 Hb_000453_170--Hb_004221_020 Hb_000453_170--Hb_000827_070 Hb_000289_060 Hb_000289_060 Hb_000453_170--Hb_000289_060 Hb_011316_050--Hb_002496_030 Hb_011316_050--Hb_000827_070 Hb_001242_060 Hb_001242_060 Hb_011316_050--Hb_001242_060 Hb_004684_010 Hb_004684_010 Hb_011316_050--Hb_004684_010 Hb_000827_070--Hb_005188_050 Hb_045793_010 Hb_045793_010 Hb_000827_070--Hb_045793_010 Hb_000487_290 Hb_000487_290 Hb_000827_070--Hb_000487_290 Hb_002477_030 Hb_002477_030 Hb_000827_070--Hb_002477_030 Hb_120327_010 Hb_120327_010 Hb_000827_070--Hb_120327_010 Hb_001736_040 Hb_001736_040 Hb_000827_070--Hb_001736_040 Hb_000229_020 Hb_000229_020 Hb_010172_090--Hb_000229_020 Hb_010172_090--Hb_008500_010 Hb_012807_050 Hb_012807_050 Hb_010172_090--Hb_012807_050 Hb_010172_090--Hb_001584_150 Hb_004767_050 Hb_004767_050 Hb_010172_090--Hb_004767_050 Hb_005188_050--Hb_000487_290 Hb_002603_120 Hb_002603_120 Hb_005188_050--Hb_002603_120 Hb_000803_190 Hb_000803_190 Hb_005188_050--Hb_000803_190 Hb_005188_050--Hb_045793_010 Hb_000025_360 Hb_000025_360 Hb_005188_050--Hb_000025_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.47292 3.58845 1.56549 1.11858 3.09537 4.46422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79161 3.11784 4.18849 2.16363 1.7586

CAGE analysis