Hb_002311_040

Information

Type -
Description -
Location Contig2311: 21201-24829
Sequence    

Annotation

kegg
ID rcu:RCOM_0999800
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP27886.1
description hypothetical protein JCGZ_18966 [Jatropha curcas]
swissprot
ID Q9LSQ2
description Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
trembl
ID A0A067JV86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18966 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24285: 18252-20555 , PASA_asmbl_24286: 21198-21555 , PASA_asmbl_24287: 21820-22200 , PASA_asmbl_24288: 22385-22535 , PASA_asmbl_24289: 22562-22921 , PASA_asmbl_24291: 23341-23463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_040 0.0 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
2 Hb_000723_130 0.0550096368 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
3 Hb_002942_100 0.0589482969 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
4 Hb_004684_010 0.0667236286 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
5 Hb_009486_200 0.0694671273 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
6 Hb_008500_010 0.0704619134 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
7 Hb_001198_100 0.0747736243 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
8 Hb_004724_060 0.0753477495 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
9 Hb_001584_150 0.0756707425 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
10 Hb_000072_220 0.0760929787 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
11 Hb_001341_170 0.0768856309 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
12 Hb_002835_370 0.0771688056 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
13 Hb_000577_010 0.0772470156 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
14 Hb_001507_020 0.0774063199 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
15 Hb_007163_090 0.0781143095 - - PREDICTED: protein spt2-like [Jatropha curcas]
16 Hb_009548_020 0.0785724387 - - structural constituent of cell wall, putative [Ricinus communis]
17 Hb_000832_020 0.079349211 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
18 Hb_123352_020 0.0810789683 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
19 Hb_004143_130 0.0813394494 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
20 Hb_006915_030 0.0824987951 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_040 Hb_002311_040 Hb_000723_130 Hb_000723_130 Hb_002311_040--Hb_000723_130 Hb_002942_100 Hb_002942_100 Hb_002311_040--Hb_002942_100 Hb_004684_010 Hb_004684_010 Hb_002311_040--Hb_004684_010 Hb_009486_200 Hb_009486_200 Hb_002311_040--Hb_009486_200 Hb_008500_010 Hb_008500_010 Hb_002311_040--Hb_008500_010 Hb_001198_100 Hb_001198_100 Hb_002311_040--Hb_001198_100 Hb_006915_030 Hb_006915_030 Hb_000723_130--Hb_006915_030 Hb_000571_110 Hb_000571_110 Hb_000723_130--Hb_000571_110 Hb_009548_020 Hb_009548_020 Hb_000723_130--Hb_009548_020 Hb_000723_130--Hb_002942_100 Hb_000832_020 Hb_000832_020 Hb_000723_130--Hb_000832_020 Hb_003253_040 Hb_003253_040 Hb_002942_100--Hb_003253_040 Hb_002942_100--Hb_006915_030 Hb_004143_130 Hb_004143_130 Hb_002942_100--Hb_004143_130 Hb_012022_090 Hb_012022_090 Hb_002942_100--Hb_012022_090 Hb_001341_170 Hb_001341_170 Hb_002942_100--Hb_001341_170 Hb_007416_180 Hb_007416_180 Hb_004684_010--Hb_007416_180 Hb_003464_060 Hb_003464_060 Hb_004684_010--Hb_003464_060 Hb_000768_040 Hb_000768_040 Hb_004684_010--Hb_000768_040 Hb_015807_070 Hb_015807_070 Hb_004684_010--Hb_015807_070 Hb_004724_060 Hb_004724_060 Hb_004684_010--Hb_004724_060 Hb_009486_200--Hb_008500_010 Hb_009486_200--Hb_004143_130 Hb_012656_030 Hb_012656_030 Hb_009486_200--Hb_012656_030 Hb_002678_020 Hb_002678_020 Hb_009486_200--Hb_002678_020 Hb_000204_210 Hb_000204_210 Hb_009486_200--Hb_000204_210 Hb_006316_040 Hb_006316_040 Hb_008500_010--Hb_006316_040 Hb_001584_150 Hb_001584_150 Hb_008500_010--Hb_001584_150 Hb_008500_010--Hb_012656_030 Hb_008500_010--Hb_004724_060 Hb_008500_010--Hb_015807_070 Hb_009767_110 Hb_009767_110 Hb_001198_100--Hb_009767_110 Hb_000028_480 Hb_000028_480 Hb_001198_100--Hb_000028_480 Hb_006649_050 Hb_006649_050 Hb_001198_100--Hb_006649_050 Hb_001198_100--Hb_006915_030 Hb_001409_020 Hb_001409_020 Hb_001198_100--Hb_001409_020 Hb_001198_100--Hb_001341_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6179 2.43931 1.23756 1.57899 2.36793 3.74095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03452 1.97932 4.24119 2.3356 1.94705

CAGE analysis