Hb_004143_130

Information

Type -
Description -
Location Contig4143: 116071-153124
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11160g
description POPTRDRAFT_551710, POPTRDRAFT_551712; hypothetical protein
nr
ID XP_012068037.1
description PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
swissprot
ID Q54U63
description BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=3 SV=2
trembl
ID B9GN87
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s11160g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41046: 116962-120176 , PASA_asmbl_41047: 121286-123701 , PASA_asmbl_41049: 132308-132522 , PASA_asmbl_41050: 132831-133383 , PASA_asmbl_41051: 136735-141456 , PASA_asmbl_41052: 141523-141839 , PASA_asmbl_41053: 141866-144251 , PASA_asmbl_41054: 144356-144895 , PASA_asmbl_41055: 145043-145634 , PASA_asmbl_41056: 145768-164024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004143_130 0.0 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
2 Hb_000028_280 0.0649416226 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
3 Hb_002942_100 0.0652616157 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
4 Hb_003253_040 0.0668137867 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
5 Hb_010174_110 0.0673775121 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
6 Hb_002740_110 0.0675093223 - - PREDICTED: phytochrome A [Jatropha curcas]
7 Hb_004032_380 0.0676680777 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
8 Hb_001198_100 0.0699222399 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
9 Hb_000890_050 0.07012389 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
10 Hb_000270_670 0.0737914855 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
11 Hb_004225_050 0.0754132586 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
12 Hb_001004_060 0.0765809379 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
13 Hb_004994_220 0.0786837917 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
14 Hb_000107_490 0.0788840436 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
15 Hb_009486_200 0.0798134349 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
16 Hb_001205_230 0.0798884817 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
17 Hb_007441_220 0.080126064 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
18 Hb_001341_170 0.0803262499 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
19 Hb_001007_060 0.0805680094 - - Transcriptional corepressor SEUSS [Glycine soja]
20 Hb_005901_020 0.0810303685 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004143_130 Hb_004143_130 Hb_000028_280 Hb_000028_280 Hb_004143_130--Hb_000028_280 Hb_002942_100 Hb_002942_100 Hb_004143_130--Hb_002942_100 Hb_003253_040 Hb_003253_040 Hb_004143_130--Hb_003253_040 Hb_010174_110 Hb_010174_110 Hb_004143_130--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_004143_130--Hb_002740_110 Hb_004032_380 Hb_004032_380 Hb_004143_130--Hb_004032_380 Hb_000343_120 Hb_000343_120 Hb_000028_280--Hb_000343_120 Hb_000028_280--Hb_002740_110 Hb_003605_110 Hb_003605_110 Hb_000028_280--Hb_003605_110 Hb_000028_280--Hb_003253_040 Hb_004994_220 Hb_004994_220 Hb_000028_280--Hb_004994_220 Hb_002942_100--Hb_003253_040 Hb_002311_040 Hb_002311_040 Hb_002942_100--Hb_002311_040 Hb_006915_030 Hb_006915_030 Hb_002942_100--Hb_006915_030 Hb_012022_090 Hb_012022_090 Hb_002942_100--Hb_012022_090 Hb_001341_170 Hb_001341_170 Hb_002942_100--Hb_001341_170 Hb_003253_040--Hb_002740_110 Hb_003253_040--Hb_010174_110 Hb_001199_100 Hb_001199_100 Hb_003253_040--Hb_001199_100 Hb_002063_020 Hb_002063_020 Hb_003253_040--Hb_002063_020 Hb_010174_110--Hb_002740_110 Hb_000002_010 Hb_000002_010 Hb_010174_110--Hb_000002_010 Hb_000107_490 Hb_000107_490 Hb_010174_110--Hb_000107_490 Hb_010174_110--Hb_004994_220 Hb_002740_110--Hb_004994_220 Hb_002740_110--Hb_004032_380 Hb_004032_380--Hb_010174_110 Hb_005901_020 Hb_005901_020 Hb_004032_380--Hb_005901_020 Hb_004032_380--Hb_003253_040 Hb_004032_380--Hb_000028_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.91623 5.7306 1.75206 3.03445 4.38188 5.90725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.63985 3.67642 6.76286 5.35275 5.52813

CAGE analysis