Hb_000028_280

Information

Type transcription factor
Description TF Family: NF-X1
Location Contig28: 268457-272450
Sequence    

Annotation

kegg
ID pop:POPTR_0012s04070g
description POPTRDRAFT_569357; NF-X1 type zinc finger family protein
nr
ID XP_012087618.1
description PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
swissprot
ID Q9SY59
description NF-X1-type zinc finger protein NFXL1 OS=Arabidopsis thaliana GN=NFXL1 PE=2 SV=1
trembl
ID A0A067JXU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25309 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nf-x-like 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_280 0.0 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
2 Hb_000343_120 0.0513961645 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
3 Hb_002740_110 0.0518476551 - - PREDICTED: phytochrome A [Jatropha curcas]
4 Hb_004143_130 0.0649416226 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
5 Hb_003605_110 0.0668438927 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X1 [Jatropha curcas]
6 Hb_003253_040 0.0695173131 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
7 Hb_004994_220 0.0704707774 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
8 Hb_002942_100 0.0753926518 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
9 Hb_004032_380 0.0755619919 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
10 Hb_009545_100 0.0755655267 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
11 Hb_001341_170 0.0763814443 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
12 Hb_009558_030 0.0765423966 - - myb3r3, putative [Ricinus communis]
13 Hb_010174_110 0.0767723283 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
14 Hb_002740_180 0.0776909398 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001199_100 0.0786259828 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
16 Hb_004117_310 0.0792039837 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
17 Hb_002903_060 0.0804548317 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
18 Hb_002027_290 0.080867519 - - PREDICTED: NPL4-like protein 1 [Jatropha curcas]
19 Hb_000245_040 0.0822943664 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
20 Hb_005730_090 0.0827207023 - - PREDICTED: uncharacterized protein LOC105631484 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_280 Hb_000028_280 Hb_000343_120 Hb_000343_120 Hb_000028_280--Hb_000343_120 Hb_002740_110 Hb_002740_110 Hb_000028_280--Hb_002740_110 Hb_004143_130 Hb_004143_130 Hb_000028_280--Hb_004143_130 Hb_003605_110 Hb_003605_110 Hb_000028_280--Hb_003605_110 Hb_003253_040 Hb_003253_040 Hb_000028_280--Hb_003253_040 Hb_004994_220 Hb_004994_220 Hb_000028_280--Hb_004994_220 Hb_000166_130 Hb_000166_130 Hb_000343_120--Hb_000166_130 Hb_000035_290 Hb_000035_290 Hb_000343_120--Hb_000035_290 Hb_009545_100 Hb_009545_100 Hb_000343_120--Hb_009545_100 Hb_001199_100 Hb_001199_100 Hb_000343_120--Hb_001199_100 Hb_003029_110 Hb_003029_110 Hb_000343_120--Hb_003029_110 Hb_002740_110--Hb_003253_040 Hb_010174_110 Hb_010174_110 Hb_002740_110--Hb_010174_110 Hb_002740_110--Hb_004994_220 Hb_004032_380 Hb_004032_380 Hb_002740_110--Hb_004032_380 Hb_002740_110--Hb_004143_130 Hb_002942_100 Hb_002942_100 Hb_004143_130--Hb_002942_100 Hb_004143_130--Hb_003253_040 Hb_004143_130--Hb_010174_110 Hb_004143_130--Hb_004032_380 Hb_003605_110--Hb_002740_110 Hb_005065_010 Hb_005065_010 Hb_003605_110--Hb_005065_010 Hb_003605_110--Hb_003253_040 Hb_003605_110--Hb_000343_120 Hb_003605_110--Hb_009545_100 Hb_003253_040--Hb_010174_110 Hb_003253_040--Hb_001199_100 Hb_003253_040--Hb_002942_100 Hb_002063_020 Hb_002063_020 Hb_003253_040--Hb_002063_020 Hb_001341_170 Hb_001341_170 Hb_004994_220--Hb_001341_170 Hb_004994_220--Hb_010174_110 Hb_000890_210 Hb_000890_210 Hb_004994_220--Hb_000890_210 Hb_000260_270 Hb_000260_270 Hb_004994_220--Hb_000260_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.92716 12.9946 3.42791 8.75378 14.2419 14.3354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3548 9.21553 14.3154 12.4807 11.4993

CAGE analysis