Hb_005065_010

Information

Type -
Description -
Location Contig5065: 10083-18600
Sequence    

Annotation

kegg
ID pop:POPTR_0015s15760g
description POPTRDRAFT_575570; zinc finger family protein
nr
ID XP_012074621.1
description PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
swissprot
ID Q9SKC3
description Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana GN=ARI9 PE=2 SV=1
trembl
ID A0A067KI26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10446 PE=4 SV=1
Gene Ontology
ID GO:0003676
description e3 ubiquitin-protein ligase rnf216

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46158: 17652-18496 , PASA_asmbl_46159: 18529-18758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005065_010 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
2 Hb_009545_100 0.0729741916 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
3 Hb_012022_090 0.0730402088 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
4 Hb_000116_500 0.0756709328 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
5 Hb_001143_160 0.0758958215 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
6 Hb_021297_050 0.0767790824 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
7 Hb_003605_110 0.0777354833 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X1 [Jatropha curcas]
8 Hb_000608_320 0.0794294064 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
9 Hb_002740_180 0.080673467 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005731_130 0.0807299679 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
11 Hb_002027_290 0.0817765434 - - PREDICTED: NPL4-like protein 1 [Jatropha curcas]
12 Hb_002740_110 0.0827319204 - - PREDICTED: phytochrome A [Jatropha curcas]
13 Hb_002053_080 0.0829474262 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21300 [Jatropha curcas]
14 Hb_002811_060 0.083096698 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
15 Hb_001341_170 0.0833141338 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
16 Hb_005730_090 0.0833579077 - - PREDICTED: uncharacterized protein LOC105631484 [Jatropha curcas]
17 Hb_000028_280 0.0842507543 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
18 Hb_000676_110 0.0853871635 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
19 Hb_002025_020 0.0861436397 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
20 Hb_000343_120 0.0871585362 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]

Gene co-expression network

sample Hb_005065_010 Hb_005065_010 Hb_009545_100 Hb_009545_100 Hb_005065_010--Hb_009545_100 Hb_012022_090 Hb_012022_090 Hb_005065_010--Hb_012022_090 Hb_000116_500 Hb_000116_500 Hb_005065_010--Hb_000116_500 Hb_001143_160 Hb_001143_160 Hb_005065_010--Hb_001143_160 Hb_021297_050 Hb_021297_050 Hb_005065_010--Hb_021297_050 Hb_003605_110 Hb_003605_110 Hb_005065_010--Hb_003605_110 Hb_002025_020 Hb_002025_020 Hb_009545_100--Hb_002025_020 Hb_000343_120 Hb_000343_120 Hb_009545_100--Hb_000343_120 Hb_000347_070 Hb_000347_070 Hb_009545_100--Hb_000347_070 Hb_009545_100--Hb_000116_500 Hb_003029_110 Hb_003029_110 Hb_009545_100--Hb_003029_110 Hb_000225_040 Hb_000225_040 Hb_009545_100--Hb_000225_040 Hb_002811_060 Hb_002811_060 Hb_012022_090--Hb_002811_060 Hb_000213_010 Hb_000213_010 Hb_012022_090--Hb_000213_010 Hb_012022_090--Hb_000116_500 Hb_009548_020 Hb_009548_020 Hb_012022_090--Hb_009548_020 Hb_012022_090--Hb_001143_160 Hb_002942_100 Hb_002942_100 Hb_012022_090--Hb_002942_100 Hb_000116_500--Hb_002811_060 Hb_000116_500--Hb_021297_050 Hb_123903_010 Hb_123903_010 Hb_000116_500--Hb_123903_010 Hb_001195_320 Hb_001195_320 Hb_000116_500--Hb_001195_320 Hb_123352_020 Hb_123352_020 Hb_001143_160--Hb_123352_020 Hb_000123_210 Hb_000123_210 Hb_001143_160--Hb_000123_210 Hb_007163_090 Hb_007163_090 Hb_001143_160--Hb_007163_090 Hb_001143_160--Hb_000225_040 Hb_001493_030 Hb_001493_030 Hb_001143_160--Hb_001493_030 Hb_000011_200 Hb_000011_200 Hb_001143_160--Hb_000011_200 Hb_021297_050--Hb_001195_320 Hb_001860_040 Hb_001860_040 Hb_021297_050--Hb_001860_040 Hb_000667_030 Hb_000667_030 Hb_021297_050--Hb_000667_030 Hb_021297_050--Hb_000213_010 Hb_000029_300 Hb_000029_300 Hb_021297_050--Hb_000029_300 Hb_000028_280 Hb_000028_280 Hb_003605_110--Hb_000028_280 Hb_002740_110 Hb_002740_110 Hb_003605_110--Hb_002740_110 Hb_003253_040 Hb_003253_040 Hb_003605_110--Hb_003253_040 Hb_003605_110--Hb_000343_120 Hb_003605_110--Hb_009545_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.26383 10.8095 5.17608 11.1627 17.7272 13.249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.82003 9.52655 14.84 13.6599 7.82859

CAGE analysis