Hb_001860_040

Information

Type -
Description -
Location Contig1860: 64967-78713
Sequence    

Annotation

kegg
ID rcu:RCOM_1299930
description plant RNA cleavage stimulation factor, putative
nr
ID XP_012074245.1
description PREDICTED: cleavage stimulation factor subunit 77 isoform X4 [Jatropha curcas]
swissprot
ID Q8GUP1
description Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana GN=CSTF77 PE=1 SV=1
trembl
ID B9S078
description Plant RNA cleavage stimulation factor, putative OS=Ricinus communis GN=RCOM_1299930 PE=4 SV=1
Gene Ontology
ID GO:0000276
description cleavage stimulation factor subunit 77 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18263: 65152-78389 , PASA_asmbl_18266: 78469-78823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001860_040 0.0 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X4 [Jatropha curcas]
2 Hb_001195_320 0.0622611145 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
3 Hb_021297_050 0.0664911291 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
4 Hb_002329_040 0.0678957209 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
5 Hb_007426_130 0.0743161906 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
6 Hb_001343_040 0.0751894872 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
7 Hb_012053_080 0.0788221328 - - AP-2 complex subunit alpha, putative [Ricinus communis]
8 Hb_000740_100 0.0814598083 - - calpain, putative [Ricinus communis]
9 Hb_025477_040 0.0824907977 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
10 Hb_000261_030 0.0837957896 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
11 Hb_008112_030 0.0843323576 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000922_370 0.084528831 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
13 Hb_012395_140 0.084639781 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
14 Hb_005731_090 0.0850067497 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
15 Hb_001377_160 0.0851799141 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
16 Hb_003044_020 0.0853427936 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
17 Hb_000990_090 0.0864948154 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
18 Hb_000183_020 0.0865358727 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
19 Hb_000395_070 0.0870112556 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
20 Hb_003371_110 0.0870476421 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001860_040 Hb_001860_040 Hb_001195_320 Hb_001195_320 Hb_001860_040--Hb_001195_320 Hb_021297_050 Hb_021297_050 Hb_001860_040--Hb_021297_050 Hb_002329_040 Hb_002329_040 Hb_001860_040--Hb_002329_040 Hb_007426_130 Hb_007426_130 Hb_001860_040--Hb_007426_130 Hb_001343_040 Hb_001343_040 Hb_001860_040--Hb_001343_040 Hb_012053_080 Hb_012053_080 Hb_001860_040--Hb_012053_080 Hb_000166_130 Hb_000166_130 Hb_001195_320--Hb_000166_130 Hb_003371_110 Hb_003371_110 Hb_001195_320--Hb_003371_110 Hb_001195_320--Hb_002329_040 Hb_003029_110 Hb_003029_110 Hb_001195_320--Hb_003029_110 Hb_014361_070 Hb_014361_070 Hb_001195_320--Hb_014361_070 Hb_000183_020 Hb_000183_020 Hb_001195_320--Hb_000183_020 Hb_000116_500 Hb_000116_500 Hb_021297_050--Hb_000116_500 Hb_021297_050--Hb_001195_320 Hb_000667_030 Hb_000667_030 Hb_021297_050--Hb_000667_030 Hb_000213_010 Hb_000213_010 Hb_021297_050--Hb_000213_010 Hb_000029_300 Hb_000029_300 Hb_021297_050--Hb_000029_300 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_000740_100 Hb_000740_100 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_002329_040--Hb_000183_020 Hb_000922_370 Hb_000922_370 Hb_007426_130--Hb_000922_370 Hb_007426_130--Hb_002329_040 Hb_009615_170 Hb_009615_170 Hb_007426_130--Hb_009615_170 Hb_007426_130--Hb_000183_020 Hb_001821_090 Hb_001821_090 Hb_007426_130--Hb_001821_090 Hb_000261_030 Hb_000261_030 Hb_007426_130--Hb_000261_030 Hb_002815_030 Hb_002815_030 Hb_001343_040--Hb_002815_030 Hb_000613_050 Hb_000613_050 Hb_001343_040--Hb_000613_050 Hb_000592_030 Hb_000592_030 Hb_001343_040--Hb_000592_030 Hb_000395_070 Hb_000395_070 Hb_001343_040--Hb_000395_070 Hb_001814_030 Hb_001814_030 Hb_001343_040--Hb_001814_030 Hb_001343_040--Hb_012395_140 Hb_001935_110 Hb_001935_110 Hb_012053_080--Hb_001935_110 Hb_160459_040 Hb_160459_040 Hb_012053_080--Hb_160459_040 Hb_000035_170 Hb_000035_170 Hb_012053_080--Hb_000035_170 Hb_012053_080--Hb_027380_140 Hb_009296_010 Hb_009296_010 Hb_012053_080--Hb_009296_010 Hb_025477_040 Hb_025477_040 Hb_012053_080--Hb_025477_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.29202 7.40061 3.9635 6.37099 8.52071 9.2436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.69723 2.52776 4.44367 6.73718 4.7801

CAGE analysis