Hb_002107_070

Information

Type -
Description -
Location Contig2107: 42855-47113
Sequence    

Annotation

kegg
ID rcu:RCOM_1598630
description hypothetical protein
nr
ID XP_002510568.1
description hypothetical protein RCOM_1598630 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R8C5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1598630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21799: 41245-42062 , PASA_asmbl_21801: 42947-43877 , PASA_asmbl_21802: 43879-44047 , PASA_asmbl_21803: 44113-46843
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002107_070 0.0 - - hypothetical protein RCOM_1598630 [Ricinus communis]
2 Hb_104061_020 0.0443467395 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
3 Hb_002329_040 0.0479161722 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
4 Hb_000369_130 0.0557687079 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
5 Hb_001821_090 0.0558954333 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
6 Hb_028487_010 0.0586070393 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
7 Hb_007635_030 0.0602887272 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
8 Hb_009175_020 0.0603081203 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
9 Hb_003058_060 0.0613394575 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
10 Hb_000579_230 0.0639263465 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
11 Hb_006252_020 0.0660237547 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
12 Hb_000740_100 0.066044567 - - calpain, putative [Ricinus communis]
13 Hb_001454_280 0.0661036299 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
14 Hb_000307_210 0.0671482956 - - Transportin 1 isoform 1 [Theobroma cacao]
15 Hb_000183_020 0.0694759501 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
16 Hb_009615_170 0.0695185909 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
17 Hb_005143_030 0.0697646035 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
18 Hb_011173_030 0.0705354645 - - pumilio, putative [Ricinus communis]
19 Hb_004627_060 0.0711534346 - - PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
20 Hb_000922_370 0.0712928344 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]

Gene co-expression network

sample Hb_002107_070 Hb_002107_070 Hb_104061_020 Hb_104061_020 Hb_002107_070--Hb_104061_020 Hb_002329_040 Hb_002329_040 Hb_002107_070--Hb_002329_040 Hb_000369_130 Hb_000369_130 Hb_002107_070--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_002107_070--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_002107_070--Hb_028487_010 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030 Hb_000579_230 Hb_000579_230 Hb_104061_020--Hb_000579_230 Hb_104061_020--Hb_002329_040 Hb_010053_030 Hb_010053_030 Hb_104061_020--Hb_010053_030 Hb_000740_100 Hb_000740_100 Hb_104061_020--Hb_000740_100 Hb_009175_020 Hb_009175_020 Hb_104061_020--Hb_009175_020 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_000183_020 Hb_000183_020 Hb_002329_040--Hb_000183_020 Hb_003058_060 Hb_003058_060 Hb_000369_130--Hb_003058_060 Hb_006355_090 Hb_006355_090 Hb_000369_130--Hb_006355_090 Hb_000369_130--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_000369_130--Hb_005143_030 Hb_001621_130 Hb_001621_130 Hb_000369_130--Hb_001621_130 Hb_000069_410 Hb_000069_410 Hb_001821_090--Hb_000069_410 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_001821_090--Hb_028487_010 Hb_001821_090--Hb_003058_060 Hb_001821_090--Hb_000579_230 Hb_000307_210 Hb_000307_210 Hb_028487_010--Hb_000307_210 Hb_011173_030 Hb_011173_030 Hb_028487_010--Hb_011173_030 Hb_028487_010--Hb_000740_100 Hb_028487_010--Hb_005143_030 Hb_001454_280 Hb_001454_280 Hb_007635_030--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_007635_030--Hb_008112_030 Hb_002174_020 Hb_002174_020 Hb_007635_030--Hb_002174_020 Hb_007635_030--Hb_002329_040 Hb_007635_030--Hb_009615_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7807 12.9654 5.24599 7.01202 13.1821 13.2167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.77695 5.91484 7.28111 13.4062 7.90327

CAGE analysis