Hb_001621_130

Information

Type -
Description -
Location Contig1621: 162623-171636
Sequence    

Annotation

kegg
ID rcu:RCOM_1480050
description pumilio, putative
nr
ID XP_012088832.1
description PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9ZW07
description Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
trembl
ID B9SDY1
description Pumilio, putative OS=Ricinus communis GN=RCOM_1480050 PE=4 SV=1
Gene Ontology
ID GO:0003723
description pumilio homolog 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14633: 162655-171228 , PASA_asmbl_14635: 169477-169968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_130 0.0 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
2 Hb_010053_030 0.0748211502 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
3 Hb_000369_130 0.0763935883 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
4 Hb_006478_060 0.0816190423 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
5 Hb_000343_030 0.0817682774 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
6 Hb_000923_080 0.082082774 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
7 Hb_000505_020 0.0833546019 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
8 Hb_000307_210 0.083594363 - - Transportin 1 isoform 1 [Theobroma cacao]
9 Hb_004974_010 0.0837734268 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
10 Hb_005143_030 0.0847589274 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
11 Hb_000613_080 0.0892363152 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
12 Hb_002107_070 0.0902214881 - - hypothetical protein RCOM_1598630 [Ricinus communis]
13 Hb_001235_140 0.0908331852 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
14 Hb_104061_020 0.092552344 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
15 Hb_003498_120 0.0928175416 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
16 Hb_001221_150 0.0938872216 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
17 Hb_004429_100 0.0938966484 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
18 Hb_001034_070 0.0947670827 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_001617_060 0.0958773869 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
20 Hb_000181_250 0.096998501 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]

Gene co-expression network

sample Hb_001621_130 Hb_001621_130 Hb_010053_030 Hb_010053_030 Hb_001621_130--Hb_010053_030 Hb_000369_130 Hb_000369_130 Hb_001621_130--Hb_000369_130 Hb_006478_060 Hb_006478_060 Hb_001621_130--Hb_006478_060 Hb_000343_030 Hb_000343_030 Hb_001621_130--Hb_000343_030 Hb_000923_080 Hb_000923_080 Hb_001621_130--Hb_000923_080 Hb_000505_020 Hb_000505_020 Hb_001621_130--Hb_000505_020 Hb_010053_030--Hb_000923_080 Hb_010053_030--Hb_000505_020 Hb_104061_020 Hb_104061_020 Hb_010053_030--Hb_104061_020 Hb_001235_140 Hb_001235_140 Hb_010053_030--Hb_001235_140 Hb_000648_100 Hb_000648_100 Hb_010053_030--Hb_000648_100 Hb_004096_070 Hb_004096_070 Hb_010053_030--Hb_004096_070 Hb_002107_070 Hb_002107_070 Hb_000369_130--Hb_002107_070 Hb_003058_060 Hb_003058_060 Hb_000369_130--Hb_003058_060 Hb_006355_090 Hb_006355_090 Hb_000369_130--Hb_006355_090 Hb_001821_090 Hb_001821_090 Hb_000369_130--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_000369_130--Hb_005143_030 Hb_002374_320 Hb_002374_320 Hb_006478_060--Hb_002374_320 Hb_006478_060--Hb_010053_030 Hb_011930_080 Hb_011930_080 Hb_006478_060--Hb_011930_080 Hb_006478_060--Hb_000923_080 Hb_174821_010 Hb_174821_010 Hb_006478_060--Hb_174821_010 Hb_000300_440 Hb_000300_440 Hb_000343_030--Hb_000300_440 Hb_004218_030 Hb_004218_030 Hb_000343_030--Hb_004218_030 Hb_100215_010 Hb_100215_010 Hb_000343_030--Hb_100215_010 Hb_003952_150 Hb_003952_150 Hb_000343_030--Hb_003952_150 Hb_000920_210 Hb_000920_210 Hb_000343_030--Hb_000920_210 Hb_004235_080 Hb_004235_080 Hb_000923_080--Hb_004235_080 Hb_000923_080--Hb_000648_100 Hb_004209_020 Hb_004209_020 Hb_000923_080--Hb_004209_020 Hb_008159_020 Hb_008159_020 Hb_000923_080--Hb_008159_020 Hb_000923_080--Hb_104061_020 Hb_000109_100 Hb_000109_100 Hb_000505_020--Hb_000109_100 Hb_000505_020--Hb_104061_020 Hb_003498_120 Hb_003498_120 Hb_000505_020--Hb_003498_120 Hb_002078_100 Hb_002078_100 Hb_000505_020--Hb_002078_100 Hb_000505_020--Hb_001235_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5963 20.5528 9.49413 14.8786 27.9982 29.674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7514 8.68991 11.8422 33.3685 9.50787

CAGE analysis