Hb_004209_020

Information

Type -
Description -
Location Contig4209: 29860-42401
Sequence    

Annotation

kegg
ID rcu:RCOM_0364160
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012081859.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LIH9
description DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis thaliana GN=RH51 PE=2 SV=1
trembl
ID A0A067KB69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19228 PE=3 SV=1
Gene Ontology
ID GO:0003723
description dead-box atp-dependent rna helicase 51-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41585: 35319-35701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004209_020 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
2 Hb_002835_230 0.0616078149 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
3 Hb_131646_010 0.0638481208 - - protein arginine n-methyltransferase, putative [Ricinus communis]
4 Hb_004235_080 0.0643101486 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
5 Hb_000923_080 0.0644012773 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
6 Hb_004785_100 0.0679497671 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002375_010 0.0716599239 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
8 Hb_001307_080 0.0724657349 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
9 Hb_001347_040 0.0746678411 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
10 Hb_104061_020 0.0762582037 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
11 Hb_000390_320 0.0783744798 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
12 Hb_003018_130 0.0793771894 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
13 Hb_001488_200 0.079381447 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
14 Hb_000190_120 0.0804342261 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
15 Hb_032278_020 0.081332332 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
16 Hb_005588_090 0.0818291473 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
17 Hb_008159_020 0.0837599156 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
18 Hb_003952_150 0.0843095218 - - PREDICTED: cactin [Jatropha curcas]
19 Hb_005965_030 0.0849304713 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
20 Hb_000664_070 0.0849903921 - - PREDICTED: protein cereblon [Jatropha curcas]

Gene co-expression network

sample Hb_004209_020 Hb_004209_020 Hb_002835_230 Hb_002835_230 Hb_004209_020--Hb_002835_230 Hb_131646_010 Hb_131646_010 Hb_004209_020--Hb_131646_010 Hb_004235_080 Hb_004235_080 Hb_004209_020--Hb_004235_080 Hb_000923_080 Hb_000923_080 Hb_004209_020--Hb_000923_080 Hb_004785_100 Hb_004785_100 Hb_004209_020--Hb_004785_100 Hb_002375_010 Hb_002375_010 Hb_004209_020--Hb_002375_010 Hb_002835_230--Hb_004785_100 Hb_002078_110 Hb_002078_110 Hb_002835_230--Hb_002078_110 Hb_002835_230--Hb_131646_010 Hb_002686_250 Hb_002686_250 Hb_002835_230--Hb_002686_250 Hb_002823_030 Hb_002823_030 Hb_002835_230--Hb_002823_030 Hb_014361_070 Hb_014361_070 Hb_002835_230--Hb_014361_070 Hb_131646_010--Hb_002686_250 Hb_131646_010--Hb_004785_100 Hb_003029_030 Hb_003029_030 Hb_131646_010--Hb_003029_030 Hb_131646_010--Hb_002078_110 Hb_001347_040 Hb_001347_040 Hb_131646_010--Hb_001347_040 Hb_004235_080--Hb_000923_080 Hb_008159_020 Hb_008159_020 Hb_004235_080--Hb_008159_020 Hb_004235_080--Hb_002375_010 Hb_003097_170 Hb_003097_170 Hb_004235_080--Hb_003097_170 Hb_104061_020 Hb_104061_020 Hb_004235_080--Hb_104061_020 Hb_010053_030 Hb_010053_030 Hb_000923_080--Hb_010053_030 Hb_000648_100 Hb_000648_100 Hb_000923_080--Hb_000648_100 Hb_000923_080--Hb_008159_020 Hb_000923_080--Hb_104061_020 Hb_004785_100--Hb_002686_250 Hb_001821_160 Hb_001821_160 Hb_004785_100--Hb_001821_160 Hb_006960_050 Hb_006960_050 Hb_004785_100--Hb_006960_050 Hb_004785_100--Hb_002078_110 Hb_000390_320 Hb_000390_320 Hb_002375_010--Hb_000390_320 Hb_004195_200 Hb_004195_200 Hb_002375_010--Hb_004195_200 Hb_000347_070 Hb_000347_070 Hb_002375_010--Hb_000347_070 Hb_007576_110 Hb_007576_110 Hb_002375_010--Hb_007576_110 Hb_000617_180 Hb_000617_180 Hb_002375_010--Hb_000617_180 Hb_002784_020 Hb_002784_020 Hb_002375_010--Hb_002784_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.03721 6.8527 6.24424 4.02745 12.06 9.17884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.33507 5.16317 4.89589 7.37575 4.53723

CAGE analysis