Hb_008159_020

Information

Type -
Description -
Location Contig8159: 41303-43621
Sequence    

Annotation

kegg
ID pop:POPTR_0012s04700g
description POPTRDRAFT_834267; GTP-binding protein beta chain
nr
ID XP_012072542.1
description PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
swissprot
ID O24076
description Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1
trembl
ID A0A067KNU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05340 PE=4 SV=1
Gene Ontology
ID GO:0016905
description guanine nucleotide-binding protein subunit beta-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59389: 41381-43628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008159_020 0.0 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
2 Hb_004235_080 0.0521424563 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
3 Hb_000179_030 0.0607041319 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
4 Hb_000768_110 0.0613089474 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
5 Hb_006252_040 0.0636337953 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
6 Hb_002823_030 0.0649985518 - - -
7 Hb_005914_060 0.0666293671 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
8 Hb_000923_080 0.0672288998 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
9 Hb_003680_150 0.0675924203 - - srpk, putative [Ricinus communis]
10 Hb_001347_040 0.0677199909 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
11 Hb_183612_040 0.0691294961 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
12 Hb_007576_110 0.0699380581 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
13 Hb_010222_050 0.0716602791 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
14 Hb_031284_040 0.0718776112 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
15 Hb_123352_020 0.0721640179 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
16 Hb_004935_030 0.0726923951 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
17 Hb_003362_070 0.0732606898 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
18 Hb_023386_040 0.0741690171 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
19 Hb_000648_100 0.074445035 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
20 Hb_010193_050 0.0748878085 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008159_020 Hb_008159_020 Hb_004235_080 Hb_004235_080 Hb_008159_020--Hb_004235_080 Hb_000179_030 Hb_000179_030 Hb_008159_020--Hb_000179_030 Hb_000768_110 Hb_000768_110 Hb_008159_020--Hb_000768_110 Hb_006252_040 Hb_006252_040 Hb_008159_020--Hb_006252_040 Hb_002823_030 Hb_002823_030 Hb_008159_020--Hb_002823_030 Hb_005914_060 Hb_005914_060 Hb_008159_020--Hb_005914_060 Hb_000923_080 Hb_000923_080 Hb_004235_080--Hb_000923_080 Hb_002375_010 Hb_002375_010 Hb_004235_080--Hb_002375_010 Hb_004209_020 Hb_004209_020 Hb_004235_080--Hb_004209_020 Hb_003097_170 Hb_003097_170 Hb_004235_080--Hb_003097_170 Hb_104061_020 Hb_104061_020 Hb_004235_080--Hb_104061_020 Hb_006355_010 Hb_006355_010 Hb_000179_030--Hb_006355_010 Hb_023386_040 Hb_023386_040 Hb_000179_030--Hb_023386_040 Hb_000179_030--Hb_005914_060 Hb_001486_340 Hb_001486_340 Hb_000179_030--Hb_001486_340 Hb_000308_030 Hb_000308_030 Hb_000179_030--Hb_000308_030 Hb_000567_010 Hb_000567_010 Hb_000768_110--Hb_000567_010 Hb_000160_040 Hb_000160_040 Hb_000768_110--Hb_000160_040 Hb_010193_050 Hb_010193_050 Hb_000768_110--Hb_010193_050 Hb_000768_110--Hb_005914_060 Hb_000173_510 Hb_000173_510 Hb_000768_110--Hb_000173_510 Hb_000820_170 Hb_000820_170 Hb_006252_040--Hb_000820_170 Hb_006252_040--Hb_023386_040 Hb_003952_070 Hb_003952_070 Hb_006252_040--Hb_003952_070 Hb_000538_100 Hb_000538_100 Hb_006252_040--Hb_000538_100 Hb_016898_010 Hb_016898_010 Hb_006252_040--Hb_016898_010 Hb_004881_020 Hb_004881_020 Hb_006252_040--Hb_004881_020 Hb_003680_150 Hb_003680_150 Hb_002823_030--Hb_003680_150 Hb_000190_120 Hb_000190_120 Hb_002823_030--Hb_000190_120 Hb_003371_110 Hb_003371_110 Hb_002823_030--Hb_003371_110 Hb_002835_230 Hb_002835_230 Hb_002823_030--Hb_002835_230 Hb_014361_070 Hb_014361_070 Hb_002823_030--Hb_014361_070 Hb_003018_130 Hb_003018_130 Hb_002823_030--Hb_003018_130 Hb_005914_060--Hb_023386_040 Hb_000926_190 Hb_000926_190 Hb_005914_060--Hb_000926_190 Hb_142439_010 Hb_142439_010 Hb_005914_060--Hb_142439_010 Hb_003428_070 Hb_003428_070 Hb_005914_060--Hb_003428_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
154.748 153.773 106.342 98.6905 173.26 234.131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.81 119.404 101.952 139.132 72.6875

CAGE analysis