Hb_023386_040

Information

Type -
Description -
Location Contig23386: 23671-28474
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07420g
description POPTRDRAFT_553868; DNAJ heat shock N-terminal domain-containing family protein
nr
ID XP_011031877.1
description PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
swissprot
ID Q39079
description Chaperone protein dnaJ 13 OS=Arabidopsis thaliana GN=ATJ13 PE=1 SV=2
trembl
ID B9GYB0
description DNAJ heat shock N-terminal domain-containing family protein OS=Populus trichocarpa GN=POPTR_0003s07420g PE=4 SV=2
Gene Ontology
ID GO:0009536
description chaperone protein dnaj 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24558: 12821-24756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023386_040 0.0 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
2 Hb_154745_010 0.0479099911 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_000926_190 0.0518793534 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
4 Hb_006252_040 0.0546443764 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
5 Hb_005914_060 0.0564848166 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
6 Hb_000179_030 0.0607742727 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
7 Hb_003952_070 0.0657503003 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_020000_020 0.0658136253 - - Troponin C, skeletal muscle, putative [Ricinus communis]
9 Hb_016898_010 0.0661247469 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
10 Hb_002045_240 0.0666951431 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
11 Hb_004370_030 0.0669902614 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
12 Hb_007054_060 0.0682394739 - - -
13 Hb_000820_170 0.0685387688 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
14 Hb_004412_010 0.0686868181 - - -
15 Hb_002205_040 0.0701363871 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_002175_030 0.070568759 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
17 Hb_003680_150 0.0707329416 - - srpk, putative [Ricinus communis]
18 Hb_002823_030 0.0714235189 - - -
19 Hb_000120_920 0.0715398609 - - poly(A) polymerase, putative [Ricinus communis]
20 Hb_023386_020 0.0719106036 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_023386_040 Hb_023386_040 Hb_154745_010 Hb_154745_010 Hb_023386_040--Hb_154745_010 Hb_000926_190 Hb_000926_190 Hb_023386_040--Hb_000926_190 Hb_006252_040 Hb_006252_040 Hb_023386_040--Hb_006252_040 Hb_005914_060 Hb_005914_060 Hb_023386_040--Hb_005914_060 Hb_000179_030 Hb_000179_030 Hb_023386_040--Hb_000179_030 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070 Hb_002045_240 Hb_002045_240 Hb_154745_010--Hb_002045_240 Hb_000345_170 Hb_000345_170 Hb_154745_010--Hb_000345_170 Hb_020000_020 Hb_020000_020 Hb_154745_010--Hb_020000_020 Hb_001258_090 Hb_001258_090 Hb_154745_010--Hb_001258_090 Hb_110291_010 Hb_110291_010 Hb_154745_010--Hb_110291_010 Hb_023386_020 Hb_023386_020 Hb_000926_190--Hb_023386_020 Hb_007054_060 Hb_007054_060 Hb_000926_190--Hb_007054_060 Hb_000334_270 Hb_000334_270 Hb_000926_190--Hb_000334_270 Hb_000794_050 Hb_000794_050 Hb_000926_190--Hb_000794_050 Hb_000879_200 Hb_000879_200 Hb_000926_190--Hb_000879_200 Hb_000820_170 Hb_000820_170 Hb_006252_040--Hb_000820_170 Hb_006252_040--Hb_003952_070 Hb_000538_100 Hb_000538_100 Hb_006252_040--Hb_000538_100 Hb_016898_010 Hb_016898_010 Hb_006252_040--Hb_016898_010 Hb_004881_020 Hb_004881_020 Hb_006252_040--Hb_004881_020 Hb_005914_060--Hb_000926_190 Hb_005914_060--Hb_000179_030 Hb_142439_010 Hb_142439_010 Hb_005914_060--Hb_142439_010 Hb_000768_110 Hb_000768_110 Hb_005914_060--Hb_000768_110 Hb_003428_070 Hb_003428_070 Hb_005914_060--Hb_003428_070 Hb_006355_010 Hb_006355_010 Hb_000179_030--Hb_006355_010 Hb_008159_020 Hb_008159_020 Hb_000179_030--Hb_008159_020 Hb_001486_340 Hb_001486_340 Hb_000179_030--Hb_001486_340 Hb_000308_030 Hb_000308_030 Hb_000179_030--Hb_000308_030 Hb_003952_070--Hb_004881_020 Hb_007594_130 Hb_007594_130 Hb_003952_070--Hb_007594_130 Hb_003952_070--Hb_000538_100 Hb_005276_210 Hb_005276_210 Hb_003952_070--Hb_005276_210 Hb_001489_150 Hb_001489_150 Hb_003952_070--Hb_001489_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.75588 5.67958 3.98385 3.67738 7.45197 11.2445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.18663 6.4311 4.1119 5.66654 4.69656

CAGE analysis