Hb_000345_170

Information

Type -
Description -
Location Contig345: 177259-188075
Sequence    

Annotation

kegg
ID rcu:RCOM_1432610
description transcription factor, putative
nr
ID XP_012089033.1
description PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
swissprot
ID Q9SSE9
description Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana GN=JMJ25 PE=1 SV=1
trembl
ID A0A067JU18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23328 PE=4 SV=1
Gene Ontology
ID GO:0046872
description transcription factor jumonji domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35995: 179182-181042 , PASA_asmbl_35996: 185706-186032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_170 0.0 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
2 Hb_002890_020 0.0638371942 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
3 Hb_154745_010 0.0659447493 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_156973_010 0.070616161 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006915_070 0.0716437673 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
6 Hb_002527_030 0.0727721241 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
7 Hb_023386_040 0.0764704593 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
8 Hb_023386_020 0.0765484182 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
9 Hb_000207_310 0.0774392981 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
10 Hb_000977_210 0.0778884063 - - chromatin assembly factor 1, subunit A, putative [Ricinus communis]
11 Hb_001936_060 0.0782410744 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
12 Hb_000373_280 0.0783435811 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
13 Hb_000025_110 0.0803794196 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
14 Hb_001390_110 0.0805178197 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
15 Hb_000116_180 0.0812050794 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
16 Hb_000367_130 0.0819687117 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000093_080 0.0825250983 - - hypothetical protein POPTR_0008s09730g [Populus trichocarpa]
18 Hb_009467_060 0.0849098471 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
19 Hb_000926_190 0.0849594639 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
20 Hb_108216_040 0.085759623 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_170 Hb_000345_170 Hb_002890_020 Hb_002890_020 Hb_000345_170--Hb_002890_020 Hb_154745_010 Hb_154745_010 Hb_000345_170--Hb_154745_010 Hb_156973_010 Hb_156973_010 Hb_000345_170--Hb_156973_010 Hb_006915_070 Hb_006915_070 Hb_000345_170--Hb_006915_070 Hb_002527_030 Hb_002527_030 Hb_000345_170--Hb_002527_030 Hb_023386_040 Hb_023386_040 Hb_000345_170--Hb_023386_040 Hb_000207_310 Hb_000207_310 Hb_002890_020--Hb_000207_310 Hb_002205_040 Hb_002205_040 Hb_002890_020--Hb_002205_040 Hb_000029_130 Hb_000029_130 Hb_002890_020--Hb_000029_130 Hb_016898_010 Hb_016898_010 Hb_002890_020--Hb_016898_010 Hb_003952_150 Hb_003952_150 Hb_002890_020--Hb_003952_150 Hb_154745_010--Hb_023386_040 Hb_002045_240 Hb_002045_240 Hb_154745_010--Hb_002045_240 Hb_020000_020 Hb_020000_020 Hb_154745_010--Hb_020000_020 Hb_001258_090 Hb_001258_090 Hb_154745_010--Hb_001258_090 Hb_110291_010 Hb_110291_010 Hb_154745_010--Hb_110291_010 Hb_023386_020 Hb_023386_020 Hb_156973_010--Hb_023386_020 Hb_002175_030 Hb_002175_030 Hb_156973_010--Hb_002175_030 Hb_003125_160 Hb_003125_160 Hb_156973_010--Hb_003125_160 Hb_156973_010--Hb_001258_090 Hb_000853_230 Hb_000853_230 Hb_156973_010--Hb_000853_230 Hb_000403_050 Hb_000403_050 Hb_156973_010--Hb_000403_050 Hb_000034_040 Hb_000034_040 Hb_006915_070--Hb_000034_040 Hb_002681_070 Hb_002681_070 Hb_006915_070--Hb_002681_070 Hb_000116_180 Hb_000116_180 Hb_006915_070--Hb_000116_180 Hb_008785_040 Hb_008785_040 Hb_006915_070--Hb_008785_040 Hb_000856_110 Hb_000856_110 Hb_006915_070--Hb_000856_110 Hb_002527_030--Hb_000116_180 Hb_108216_040 Hb_108216_040 Hb_002527_030--Hb_108216_040 Hb_000645_050 Hb_000645_050 Hb_002527_030--Hb_000645_050 Hb_000051_070 Hb_000051_070 Hb_002527_030--Hb_000051_070 Hb_000085_060 Hb_000085_060 Hb_002527_030--Hb_000085_060 Hb_000926_190 Hb_000926_190 Hb_023386_040--Hb_000926_190 Hb_006252_040 Hb_006252_040 Hb_023386_040--Hb_006252_040 Hb_005914_060 Hb_005914_060 Hb_023386_040--Hb_005914_060 Hb_000179_030 Hb_000179_030 Hb_023386_040--Hb_000179_030 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.02922 2.52766 1.78104 2.128 4.75865 5.65656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.48772 3.90996 2.87719 2.6603 3.83724

CAGE analysis