Hb_000645_050

Information

Type -
Description -
Location Contig645: 64330-66397
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10530g
description POPTRDRAFT_832688; peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein
nr
ID XP_002311384.1
description peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
swissprot
ID Q9C835
description Peptidyl-prolyl cis-trans isomerase CYP21-4 OS=Arabidopsis thaliana GN=CYP21-4 PE=2 SV=1
trembl
ID B9HIP0
description Peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein OS=Populus trichocarpa GN=POPTR_0008s10530g PE=3 SV=1
Gene Ontology
ID GO:0012505
description peptidyl-prolyl cis-trans isomerase cyp21-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52253: 63416-66291 , PASA_asmbl_52254: 64002-64153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_050 0.0 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
2 Hb_003406_010 0.0640666459 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
3 Hb_054865_100 0.0652806166 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
4 Hb_000327_120 0.0656059887 - - FGFR1 oncogene partner, putative [Ricinus communis]
5 Hb_001369_180 0.0686561042 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
6 Hb_003030_070 0.068838418 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
7 Hb_007218_080 0.0705108021 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
8 Hb_000943_070 0.0737515634 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
9 Hb_001595_030 0.0786555975 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
10 Hb_007336_020 0.0794142856 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
11 Hb_002685_140 0.0794576759 - - PREDICTED: membrin-11 [Jatropha curcas]
12 Hb_001635_170 0.0796366188 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
13 Hb_000613_090 0.0796599618 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
14 Hb_150360_030 0.0806250765 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
15 Hb_003683_050 0.0807621469 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
16 Hb_000322_100 0.0809340262 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
17 Hb_033153_050 0.0815215539 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
18 Hb_000089_220 0.081853288 - - PREDICTED: protein FAM133-like [Populus euphratica]
19 Hb_002495_040 0.0818904735 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
20 Hb_000465_430 0.0826920189 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]

Gene co-expression network

sample Hb_000645_050 Hb_000645_050 Hb_003406_010 Hb_003406_010 Hb_000645_050--Hb_003406_010 Hb_054865_100 Hb_054865_100 Hb_000645_050--Hb_054865_100 Hb_000327_120 Hb_000327_120 Hb_000645_050--Hb_000327_120 Hb_001369_180 Hb_001369_180 Hb_000645_050--Hb_001369_180 Hb_003030_070 Hb_003030_070 Hb_000645_050--Hb_003030_070 Hb_007218_080 Hb_007218_080 Hb_000645_050--Hb_007218_080 Hb_000089_220 Hb_000089_220 Hb_003406_010--Hb_000089_220 Hb_002391_300 Hb_002391_300 Hb_003406_010--Hb_002391_300 Hb_005245_130 Hb_005245_130 Hb_003406_010--Hb_005245_130 Hb_004096_030 Hb_004096_030 Hb_003406_010--Hb_004096_030 Hb_003406_010--Hb_007218_080 Hb_066182_010 Hb_066182_010 Hb_054865_100--Hb_066182_010 Hb_005276_210 Hb_005276_210 Hb_054865_100--Hb_005276_210 Hb_006620_020 Hb_006620_020 Hb_054865_100--Hb_006620_020 Hb_054865_100--Hb_000327_120 Hb_000174_110 Hb_000174_110 Hb_054865_100--Hb_000174_110 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_007951_060 Hb_007951_060 Hb_000327_120--Hb_007951_060 Hb_001635_170 Hb_001635_170 Hb_000327_120--Hb_001635_170 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050 Hb_001369_180--Hb_003030_070 Hb_001369_180--Hb_007218_080 Hb_000230_560 Hb_000230_560 Hb_001369_180--Hb_000230_560 Hb_002495_040 Hb_002495_040 Hb_001369_180--Hb_002495_040 Hb_007336_020 Hb_007336_020 Hb_001369_180--Hb_007336_020 Hb_004310_130 Hb_004310_130 Hb_001369_180--Hb_004310_130 Hb_003665_060 Hb_003665_060 Hb_003030_070--Hb_003665_060 Hb_003030_070--Hb_000230_560 Hb_003030_070--Hb_002495_040 Hb_007317_110 Hb_007317_110 Hb_003030_070--Hb_007317_110 Hb_003030_070--Hb_002391_300 Hb_007218_080--Hb_004310_130 Hb_150360_030 Hb_150360_030 Hb_007218_080--Hb_150360_030 Hb_007218_080--Hb_002391_300 Hb_007218_080--Hb_003030_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.969 18.4276 15.3354 19.4971 41.3257 36.2595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.5082 28.3383 25.353 11.2212 14.0449

CAGE analysis