Hb_004310_130

Information

Type -
Description -
Location Contig4310: 101985-106328
Sequence    

Annotation

kegg
ID pop:POPTR_0002s13900g
description POPTRDRAFT_551959; RWD domain-containing family protein
nr
ID XP_012083707.1
description PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
swissprot
ID Q9QZR0
description E3 ubiquitin-protein ligase RNF25 OS=Mus musculus GN=Rnf25 PE=1 SV=2
trembl
ID A0A067KAM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14635 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase rnf25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42254: 102543-103407 , PASA_asmbl_42255: 101994-106096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004310_130 0.0 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
2 Hb_007218_080 0.0440197687 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
3 Hb_150360_030 0.0469121903 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
4 Hb_001369_180 0.0660364591 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
5 Hb_000086_380 0.0662881821 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
6 Hb_001635_170 0.067977589 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
7 Hb_000059_330 0.0697486235 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
8 Hb_000058_100 0.0707579462 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
9 Hb_000076_120 0.0709846527 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
10 Hb_003030_070 0.0742188763 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
11 Hb_011689_080 0.0744212039 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
12 Hb_003001_120 0.0748213499 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
13 Hb_004055_030 0.0752284139 - - casein kinase, putative [Ricinus communis]
14 Hb_000853_170 0.0753086687 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
15 Hb_006922_100 0.0755199072 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
16 Hb_002728_070 0.0766473032 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
17 Hb_001258_090 0.0772793 - - PREDICTED: protein spt2-like [Jatropha curcas]
18 Hb_015746_010 0.0780183351 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
19 Hb_000926_280 0.0792475212 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
20 Hb_000020_190 0.0794256232 - - hypothetical protein RCOM_0452240 [Ricinus communis]

Gene co-expression network

sample Hb_004310_130 Hb_004310_130 Hb_007218_080 Hb_007218_080 Hb_004310_130--Hb_007218_080 Hb_150360_030 Hb_150360_030 Hb_004310_130--Hb_150360_030 Hb_001369_180 Hb_001369_180 Hb_004310_130--Hb_001369_180 Hb_000086_380 Hb_000086_380 Hb_004310_130--Hb_000086_380 Hb_001635_170 Hb_001635_170 Hb_004310_130--Hb_001635_170 Hb_000059_330 Hb_000059_330 Hb_004310_130--Hb_000059_330 Hb_007218_080--Hb_001369_180 Hb_007218_080--Hb_150360_030 Hb_003406_010 Hb_003406_010 Hb_007218_080--Hb_003406_010 Hb_002391_300 Hb_002391_300 Hb_007218_080--Hb_002391_300 Hb_003030_070 Hb_003030_070 Hb_007218_080--Hb_003030_070 Hb_000053_130 Hb_000053_130 Hb_150360_030--Hb_000053_130 Hb_150360_030--Hb_001635_170 Hb_150360_030--Hb_001369_180 Hb_000076_120 Hb_000076_120 Hb_150360_030--Hb_000076_120 Hb_001369_180--Hb_003030_070 Hb_000230_560 Hb_000230_560 Hb_001369_180--Hb_000230_560 Hb_002495_040 Hb_002495_040 Hb_001369_180--Hb_002495_040 Hb_007336_020 Hb_007336_020 Hb_001369_180--Hb_007336_020 Hb_005291_030 Hb_005291_030 Hb_000086_380--Hb_005291_030 Hb_027472_150 Hb_027472_150 Hb_000086_380--Hb_027472_150 Hb_021596_030 Hb_021596_030 Hb_000086_380--Hb_021596_030 Hb_002524_010 Hb_002524_010 Hb_000086_380--Hb_002524_010 Hb_001579_320 Hb_001579_320 Hb_000086_380--Hb_001579_320 Hb_000327_120 Hb_000327_120 Hb_001635_170--Hb_000327_120 Hb_010661_030 Hb_010661_030 Hb_001635_170--Hb_010661_030 Hb_008803_090 Hb_008803_090 Hb_001635_170--Hb_008803_090 Hb_033153_050 Hb_033153_050 Hb_001635_170--Hb_033153_050 Hb_000661_250 Hb_000661_250 Hb_001635_170--Hb_000661_250 Hb_022250_030 Hb_022250_030 Hb_001635_170--Hb_022250_030 Hb_096563_010 Hb_096563_010 Hb_000059_330--Hb_096563_010 Hb_001259_090 Hb_001259_090 Hb_000059_330--Hb_001259_090 Hb_003428_030 Hb_003428_030 Hb_000059_330--Hb_003428_030 Hb_003092_040 Hb_003092_040 Hb_000059_330--Hb_003092_040 Hb_024071_020 Hb_024071_020 Hb_000059_330--Hb_024071_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.612 13.685 16.4907 15.0559 25.1411 34.6918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.6591 26.3909 19.2343 17.499 13.718

CAGE analysis