Hb_021596_030

Information

Type -
Description -
Location Contig21596: 22342-27473
Sequence    

Annotation

kegg
ID rcu:RCOM_0679450
description protein binding protein, putative
nr
ID XP_012069426.1
description PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KV54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02035 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22346: 22869-23227 , PASA_asmbl_22347: 24569-25962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021596_030 0.0 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
2 Hb_000086_380 0.082560259 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
3 Hb_012506_050 0.0893875894 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X1 [Jatropha curcas]
4 Hb_003438_050 0.0913244434 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
5 Hb_000638_120 0.0914989869 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
6 Hb_001579_320 0.1004148039 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
7 Hb_000130_410 0.100916967 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
8 Hb_002524_010 0.1041982106 - - hypothetical protein POPTR_0006s20250g [Populus trichocarpa]
9 Hb_005291_030 0.1053260029 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
10 Hb_000526_050 0.1060421816 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
11 Hb_007672_060 0.1068835989 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
12 Hb_002739_020 0.1082665203 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
13 Hb_000272_020 0.1100535617 - - oxidoreductase, putative [Ricinus communis]
14 Hb_004881_020 0.1101322004 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
15 Hb_001842_100 0.1103550489 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
16 Hb_000462_170 0.1104520419 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002217_510 0.1119829423 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003878_070 0.1122282651 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
19 Hb_002728_070 0.112687694 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
20 Hb_007123_030 0.1130983967 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_021596_030 Hb_021596_030 Hb_000086_380 Hb_000086_380 Hb_021596_030--Hb_000086_380 Hb_012506_050 Hb_012506_050 Hb_021596_030--Hb_012506_050 Hb_003438_050 Hb_003438_050 Hb_021596_030--Hb_003438_050 Hb_000638_120 Hb_000638_120 Hb_021596_030--Hb_000638_120 Hb_001579_320 Hb_001579_320 Hb_021596_030--Hb_001579_320 Hb_000130_410 Hb_000130_410 Hb_021596_030--Hb_000130_410 Hb_004310_130 Hb_004310_130 Hb_000086_380--Hb_004310_130 Hb_005291_030 Hb_005291_030 Hb_000086_380--Hb_005291_030 Hb_027472_150 Hb_027472_150 Hb_000086_380--Hb_027472_150 Hb_002524_010 Hb_002524_010 Hb_000086_380--Hb_002524_010 Hb_000086_380--Hb_001579_320 Hb_002217_510 Hb_002217_510 Hb_012506_050--Hb_002217_510 Hb_000462_170 Hb_000462_170 Hb_012506_050--Hb_000462_170 Hb_003376_330 Hb_003376_330 Hb_012506_050--Hb_003376_330 Hb_001269_610 Hb_001269_610 Hb_012506_050--Hb_001269_610 Hb_012506_050--Hb_000130_410 Hb_003025_110 Hb_003025_110 Hb_003438_050--Hb_003025_110 Hb_003438_050--Hb_000638_120 Hb_007632_240 Hb_007632_240 Hb_003438_050--Hb_007632_240 Hb_001040_100 Hb_001040_100 Hb_003438_050--Hb_001040_100 Hb_023480_010 Hb_023480_010 Hb_003438_050--Hb_023480_010 Hb_003010_020 Hb_003010_020 Hb_003438_050--Hb_003010_020 Hb_001289_080 Hb_001289_080 Hb_000638_120--Hb_001289_080 Hb_000638_120--Hb_007632_240 Hb_000638_120--Hb_003025_110 Hb_004689_050 Hb_004689_050 Hb_000638_120--Hb_004689_050 Hb_009467_060 Hb_009467_060 Hb_000638_120--Hb_009467_060 Hb_001946_010 Hb_001946_010 Hb_001579_320--Hb_001946_010 Hb_000526_050 Hb_000526_050 Hb_001579_320--Hb_000526_050 Hb_003952_070 Hb_003952_070 Hb_001579_320--Hb_003952_070 Hb_000193_190 Hb_000193_190 Hb_001579_320--Hb_000193_190 Hb_001579_320--Hb_003025_110 Hb_040262_010 Hb_040262_010 Hb_001579_320--Hb_040262_010 Hb_000318_250 Hb_000318_250 Hb_000130_410--Hb_000318_250 Hb_002026_210 Hb_002026_210 Hb_000130_410--Hb_002026_210 Hb_001396_200 Hb_001396_200 Hb_000130_410--Hb_001396_200 Hb_000708_030 Hb_000708_030 Hb_000130_410--Hb_000708_030 Hb_004324_130 Hb_004324_130 Hb_000130_410--Hb_004324_130 Hb_001546_080 Hb_001546_080 Hb_000130_410--Hb_001546_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.90783 1.77647 1.41262 1.7415 2.02018 3.14918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.60653 2.07677 0.738019 2.03971 2.03386

CAGE analysis