Hb_040262_010

Information

Type -
Description -
Location Contig40262: 1849-6917
Sequence    

Annotation

kegg
ID rcu:RCOM_0753060
description Aspartate carbamoyltransferase 2, chloroplast precursor, putative (EC:2.1.3.2)
nr
ID XP_012070892.1
description PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q43087
description Aspartate carbamoyltransferase 2, chloroplastic OS=Pisum sativum GN=PYRB2 PE=2 SV=1
trembl
ID A0A067KSR3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00934 PE=3 SV=1
Gene Ontology
ID GO:0005829
description aspartate carbamoyltransferase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040262_010 0.0 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
2 Hb_002671_100 0.0643271634 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
3 Hb_103012_010 0.0646924447 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
4 Hb_001946_010 0.0657989803 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_007317_110 0.0684844893 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
6 Hb_000260_170 0.07099183 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
7 Hb_007594_130 0.0711569438 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
8 Hb_007059_010 0.0712138089 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
9 Hb_002783_240 0.0714583003 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
10 Hb_001579_320 0.0718481955 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
11 Hb_158062_010 0.0741983886 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
12 Hb_001960_020 0.0749531422 - - PREDICTED: mitochondrial arginine transporter BAC2 [Jatropha curcas]
13 Hb_000640_240 0.0753244938 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
14 Hb_000526_050 0.0756051003 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
15 Hb_000085_160 0.0759160097 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
16 Hb_006827_020 0.0762915758 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004881_020 0.0764716244 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
18 Hb_000853_350 0.0773966411 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
19 Hb_000538_100 0.0807007405 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003952_070 0.0813142105 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_040262_010 Hb_040262_010 Hb_002671_100 Hb_002671_100 Hb_040262_010--Hb_002671_100 Hb_103012_010 Hb_103012_010 Hb_040262_010--Hb_103012_010 Hb_001946_010 Hb_001946_010 Hb_040262_010--Hb_001946_010 Hb_007317_110 Hb_007317_110 Hb_040262_010--Hb_007317_110 Hb_000260_170 Hb_000260_170 Hb_040262_010--Hb_000260_170 Hb_007594_130 Hb_007594_130 Hb_040262_010--Hb_007594_130 Hb_002671_100--Hb_007594_130 Hb_004881_020 Hb_004881_020 Hb_002671_100--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_002671_100--Hb_144598_030 Hb_004117_130 Hb_004117_130 Hb_002671_100--Hb_004117_130 Hb_002671_100--Hb_000260_170 Hb_103012_010--Hb_001946_010 Hb_103012_010--Hb_000260_170 Hb_000538_100 Hb_000538_100 Hb_103012_010--Hb_000538_100 Hb_103012_010--Hb_007317_110 Hb_011930_160 Hb_011930_160 Hb_103012_010--Hb_011930_160 Hb_002783_240 Hb_002783_240 Hb_103012_010--Hb_002783_240 Hb_001946_010--Hb_000260_170 Hb_001946_010--Hb_011930_160 Hb_000193_190 Hb_000193_190 Hb_001946_010--Hb_000193_190 Hb_003025_110 Hb_003025_110 Hb_001946_010--Hb_003025_110 Hb_000205_100 Hb_000205_100 Hb_001946_010--Hb_000205_100 Hb_006827_020 Hb_006827_020 Hb_007317_110--Hb_006827_020 Hb_000085_160 Hb_000085_160 Hb_007317_110--Hb_000085_160 Hb_003665_060 Hb_003665_060 Hb_007317_110--Hb_003665_060 Hb_000808_270 Hb_000808_270 Hb_007317_110--Hb_000808_270 Hb_003964_070 Hb_003964_070 Hb_007317_110--Hb_003964_070 Hb_007059_010 Hb_007059_010 Hb_007317_110--Hb_007059_010 Hb_000260_170--Hb_004117_130 Hb_020719_030 Hb_020719_030 Hb_000260_170--Hb_020719_030 Hb_007594_130--Hb_004881_020 Hb_003952_070 Hb_003952_070 Hb_007594_130--Hb_003952_070 Hb_000212_240 Hb_000212_240 Hb_007594_130--Hb_000212_240 Hb_003030_070 Hb_003030_070 Hb_007594_130--Hb_003030_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.44334 1.90634 2.04736 3.14594 4.81282 4.68908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52205 3.47018 1.9145 3.37545 1.45818

CAGE analysis