Hb_001946_010

Information

Type -
Description -
Location Contig1946: 2105-11466
Sequence    

Annotation

kegg
ID rcu:RCOM_0224480
description CBL-interacting serine/threonine-protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002524508.1
description CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
swissprot
ID Q9LDI3
description CBL-interacting serine/threonine-protein kinase 24 OS=Arabidopsis thaliana GN=CIPK24 PE=1 SV=1
trembl
ID B9SET9
description Non-specific serine/threonine protein kinase OS=Ricinus communis GN=RCOM_0224480 PE=4 SV=1
Gene Ontology
ID GO:0009705
description cbl-interacting serine threonine-protein kinase 24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19382: 2253-11401 , PASA_asmbl_19383: 2253-11401 , PASA_asmbl_19384: 8272-8462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_010 0.0 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
2 Hb_103012_010 0.0374304685 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
3 Hb_000260_170 0.046502701 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
4 Hb_011930_160 0.0479298347 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
5 Hb_000193_190 0.053089246 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
6 Hb_003025_110 0.0582116018 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
7 Hb_000205_100 0.0586577574 - - PREDICTED: exportin-4 [Jatropha curcas]
8 Hb_004689_050 0.0604625644 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001579_320 0.0610363208 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
10 Hb_003813_130 0.0642107712 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
11 Hb_040262_010 0.0657989803 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
12 Hb_007317_110 0.0676097384 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
13 Hb_006827_020 0.0695462402 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000011_200 0.0706851931 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
15 Hb_007576_110 0.0723642742 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
16 Hb_002783_240 0.0729415874 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
17 Hb_000789_310 0.0737455892 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
18 Hb_004881_020 0.0750029434 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
19 Hb_003375_070 0.0750202506 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
20 Hb_003163_020 0.0764041792 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001946_010 Hb_001946_010 Hb_103012_010 Hb_103012_010 Hb_001946_010--Hb_103012_010 Hb_000260_170 Hb_000260_170 Hb_001946_010--Hb_000260_170 Hb_011930_160 Hb_011930_160 Hb_001946_010--Hb_011930_160 Hb_000193_190 Hb_000193_190 Hb_001946_010--Hb_000193_190 Hb_003025_110 Hb_003025_110 Hb_001946_010--Hb_003025_110 Hb_000205_100 Hb_000205_100 Hb_001946_010--Hb_000205_100 Hb_103012_010--Hb_000260_170 Hb_000538_100 Hb_000538_100 Hb_103012_010--Hb_000538_100 Hb_007317_110 Hb_007317_110 Hb_103012_010--Hb_007317_110 Hb_103012_010--Hb_011930_160 Hb_002783_240 Hb_002783_240 Hb_103012_010--Hb_002783_240 Hb_004117_130 Hb_004117_130 Hb_000260_170--Hb_004117_130 Hb_020719_030 Hb_020719_030 Hb_000260_170--Hb_020719_030 Hb_040262_010 Hb_040262_010 Hb_000260_170--Hb_040262_010 Hb_002671_100 Hb_002671_100 Hb_000260_170--Hb_002671_100 Hb_003163_020 Hb_003163_020 Hb_011930_160--Hb_003163_020 Hb_004619_030 Hb_004619_030 Hb_011930_160--Hb_004619_030 Hb_011930_160--Hb_003025_110 Hb_011930_160--Hb_000193_190 Hb_000193_190--Hb_000205_100 Hb_000011_200 Hb_000011_200 Hb_000193_190--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_000193_190--Hb_000225_040 Hb_007576_110 Hb_007576_110 Hb_000193_190--Hb_007576_110 Hb_004410_030 Hb_004410_030 Hb_003025_110--Hb_004410_030 Hb_003025_110--Hb_000011_200 Hb_007575_050 Hb_007575_050 Hb_003025_110--Hb_007575_050 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180 Hb_000205_100--Hb_000225_040 Hb_000613_050 Hb_000613_050 Hb_000205_100--Hb_000613_050 Hb_004689_050 Hb_004689_050 Hb_000205_100--Hb_004689_050 Hb_001178_070 Hb_001178_070 Hb_000205_100--Hb_001178_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.9982 32.9542 34.8839 46.635 64.7759 71.232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.853 40.6905 37.0559 57.1223 31.62

CAGE analysis