Hb_004689_050

Information

Type -
Description -
Location Contig4689: 38638-54206
Sequence    

Annotation

kegg
ID rcu:RCOM_1104670
description hypothetical protein
nr
ID XP_002523042.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q7M3S9
description RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2
trembl
ID B9SAM3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1104670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44179: 38634-39732 , PASA_asmbl_44181: 51133-54118 , PASA_asmbl_44182: 40980-51717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004689_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004429_100 0.0539628473 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
3 Hb_033834_060 0.0580862539 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
4 Hb_001946_010 0.0604625644 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_000638_120 0.0694986714 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
6 Hb_000205_100 0.0696980719 - - PREDICTED: exportin-4 [Jatropha curcas]
7 Hb_100215_010 0.0699681988 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
8 Hb_000193_190 0.0726646029 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
9 Hb_001289_080 0.0726819885 - - PREDICTED: protein YLS9-like [Jatropha curcas]
10 Hb_006114_030 0.0727044528 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
11 Hb_103012_010 0.0736120233 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
12 Hb_000260_170 0.076852467 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
13 Hb_003025_110 0.0781848929 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
14 Hb_002374_050 0.0788792123 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
15 Hb_011930_160 0.0802313636 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
16 Hb_016898_010 0.0816334288 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
17 Hb_000271_090 0.0816967281 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_001172_010 0.0818682087 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
19 Hb_002255_030 0.0826536989 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
20 Hb_006252_040 0.0827924807 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004689_050 Hb_004689_050 Hb_004429_100 Hb_004429_100 Hb_004689_050--Hb_004429_100 Hb_033834_060 Hb_033834_060 Hb_004689_050--Hb_033834_060 Hb_001946_010 Hb_001946_010 Hb_004689_050--Hb_001946_010 Hb_000638_120 Hb_000638_120 Hb_004689_050--Hb_000638_120 Hb_000205_100 Hb_000205_100 Hb_004689_050--Hb_000205_100 Hb_100215_010 Hb_100215_010 Hb_004689_050--Hb_100215_010 Hb_004429_100--Hb_033834_060 Hb_000271_090 Hb_000271_090 Hb_004429_100--Hb_000271_090 Hb_006157_020 Hb_006157_020 Hb_004429_100--Hb_006157_020 Hb_001172_010 Hb_001172_010 Hb_004429_100--Hb_001172_010 Hb_000123_210 Hb_000123_210 Hb_004429_100--Hb_000123_210 Hb_020719_030 Hb_020719_030 Hb_033834_060--Hb_020719_030 Hb_009627_010 Hb_009627_010 Hb_033834_060--Hb_009627_010 Hb_033834_060--Hb_001172_010 Hb_001488_410 Hb_001488_410 Hb_033834_060--Hb_001488_410 Hb_103012_010 Hb_103012_010 Hb_001946_010--Hb_103012_010 Hb_000260_170 Hb_000260_170 Hb_001946_010--Hb_000260_170 Hb_011930_160 Hb_011930_160 Hb_001946_010--Hb_011930_160 Hb_000193_190 Hb_000193_190 Hb_001946_010--Hb_000193_190 Hb_003025_110 Hb_003025_110 Hb_001946_010--Hb_003025_110 Hb_001946_010--Hb_000205_100 Hb_001289_080 Hb_001289_080 Hb_000638_120--Hb_001289_080 Hb_007632_240 Hb_007632_240 Hb_000638_120--Hb_007632_240 Hb_003438_050 Hb_003438_050 Hb_000638_120--Hb_003438_050 Hb_000638_120--Hb_003025_110 Hb_009467_060 Hb_009467_060 Hb_000638_120--Hb_009467_060 Hb_000205_100--Hb_000193_190 Hb_000225_040 Hb_000225_040 Hb_000205_100--Hb_000225_040 Hb_000613_050 Hb_000613_050 Hb_000205_100--Hb_000613_050 Hb_001178_070 Hb_001178_070 Hb_000205_100--Hb_001178_070 Hb_000983_150 Hb_000983_150 Hb_100215_010--Hb_000983_150 Hb_000300_440 Hb_000300_440 Hb_100215_010--Hb_000300_440 Hb_003362_070 Hb_003362_070 Hb_100215_010--Hb_003362_070 Hb_000023_190 Hb_000023_190 Hb_100215_010--Hb_000023_190 Hb_000343_030 Hb_000343_030 Hb_100215_010--Hb_000343_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2731 10.2002 7.60811 9.64906 15.1346 21.782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7504 8.51426 10.0303 17.1375 8.7678

CAGE analysis