Hb_000271_090

Information

Type -
Description -
Location Contig271: 224863-229527
Sequence    

Annotation

kegg
ID rcu:RCOM_1247510
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_002527727.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q54ED4
description Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1
trembl
ID B9SP08
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1247510 PE=4 SV=1
Gene Ontology
ID GO:0080008
description glutamate-rich wd repeat-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28412: 224920-228936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000271_090 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_006157_020 0.0600866398 - - PREDICTED: nucleolin 1-like isoform X2 [Jatropha curcas]
3 Hb_004429_100 0.06433413 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
4 Hb_031284_040 0.0691888393 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
5 Hb_000084_120 0.0698932646 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
6 Hb_000083_160 0.0749354696 - - Cell division cycle protein, putative [Ricinus communis]
7 Hb_033834_060 0.0758108481 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
8 Hb_002027_270 0.0761057973 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
9 Hb_016898_010 0.0804890132 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
10 Hb_000205_100 0.0805867123 - - PREDICTED: exportin-4 [Jatropha curcas]
11 Hb_004689_050 0.0816967281 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011716_020 0.0862968193 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
13 Hb_012799_130 0.0869203254 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
14 Hb_001488_410 0.0898366646 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
15 Hb_004954_070 0.090147535 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
16 Hb_001617_060 0.0905035426 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
17 Hb_000123_210 0.0907895802 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
18 Hb_003362_070 0.0916473321 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
19 Hb_106371_010 0.091859375 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_006252_040 0.0919786117 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000271_090 Hb_000271_090 Hb_006157_020 Hb_006157_020 Hb_000271_090--Hb_006157_020 Hb_004429_100 Hb_004429_100 Hb_000271_090--Hb_004429_100 Hb_031284_040 Hb_031284_040 Hb_000271_090--Hb_031284_040 Hb_000084_120 Hb_000084_120 Hb_000271_090--Hb_000084_120 Hb_000083_160 Hb_000083_160 Hb_000271_090--Hb_000083_160 Hb_033834_060 Hb_033834_060 Hb_000271_090--Hb_033834_060 Hb_006157_020--Hb_004429_100 Hb_006157_020--Hb_033834_060 Hb_004689_050 Hb_004689_050 Hb_006157_020--Hb_004689_050 Hb_006157_020--Hb_031284_040 Hb_012799_130 Hb_012799_130 Hb_006157_020--Hb_012799_130 Hb_004429_100--Hb_004689_050 Hb_004429_100--Hb_033834_060 Hb_001172_010 Hb_001172_010 Hb_004429_100--Hb_001172_010 Hb_000123_210 Hb_000123_210 Hb_004429_100--Hb_000123_210 Hb_031284_040--Hb_000083_160 Hb_000173_490 Hb_000173_490 Hb_031284_040--Hb_000173_490 Hb_007575_050 Hb_007575_050 Hb_031284_040--Hb_007575_050 Hb_004935_030 Hb_004935_030 Hb_031284_040--Hb_004935_030 Hb_008159_020 Hb_008159_020 Hb_031284_040--Hb_008159_020 Hb_016898_010 Hb_016898_010 Hb_000084_120--Hb_016898_010 Hb_003362_070 Hb_003362_070 Hb_000084_120--Hb_003362_070 Hb_003952_150 Hb_003952_150 Hb_000084_120--Hb_003952_150 Hb_004602_040 Hb_004602_040 Hb_000084_120--Hb_004602_040 Hb_000101_240 Hb_000101_240 Hb_000084_120--Hb_000101_240 Hb_003428_070 Hb_003428_070 Hb_000084_120--Hb_003428_070 Hb_000083_160--Hb_004935_030 Hb_001617_060 Hb_001617_060 Hb_000083_160--Hb_001617_060 Hb_001635_090 Hb_001635_090 Hb_000083_160--Hb_001635_090 Hb_002235_170 Hb_002235_170 Hb_000083_160--Hb_002235_170 Hb_020719_030 Hb_020719_030 Hb_033834_060--Hb_020719_030 Hb_033834_060--Hb_004689_050 Hb_009627_010 Hb_009627_010 Hb_033834_060--Hb_009627_010 Hb_033834_060--Hb_001172_010 Hb_001488_410 Hb_001488_410 Hb_033834_060--Hb_001488_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3247 14.9165 8.53538 15.2575 22.1886 38.7256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6596 16.7066 14.4398 26.9379 11.0344

CAGE analysis