Hb_004429_100

Information

Type -
Description -
Location Contig4429: 90668-105038
Sequence    

Annotation

kegg
ID rcu:RCOM_1620400
description asparagine synthetase, putative
nr
ID XP_012067795.1
description PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
swissprot
ID F4IE65
description Putative methylesterase 13, chloroplastic OS=Arabidopsis thaliana GN=MES13 PE=2 SV=1
trembl
ID A0A067KYP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15723 PE=4 SV=1
Gene Ontology
ID GO:0004066
description asparagine synthetase domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42743: 90979-96608 , PASA_asmbl_42744: 96614-99251 , PASA_asmbl_42745: 103471-104468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004429_100 0.0 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
2 Hb_004689_050 0.0539628473 - - conserved hypothetical protein [Ricinus communis]
3 Hb_033834_060 0.0591720971 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
4 Hb_000271_090 0.06433413 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_006157_020 0.065279561 - - PREDICTED: nucleolin 1-like isoform X2 [Jatropha curcas]
6 Hb_001172_010 0.0659151801 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
7 Hb_000123_210 0.0704371623 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
8 Hb_004235_080 0.0729860983 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
9 Hb_000923_080 0.0773035622 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
10 Hb_001617_060 0.0789192434 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
11 Hb_031284_040 0.0821882411 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
12 Hb_004954_070 0.0821952496 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
13 Hb_008159_020 0.083519103 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
14 Hb_001946_010 0.0836341557 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
15 Hb_103012_010 0.0837851398 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
16 Hb_000300_440 0.0838065043 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
17 Hb_009627_010 0.0840752988 - - Protein dom-3, putative [Ricinus communis]
18 Hb_000856_310 0.0857624224 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
19 Hb_000193_190 0.086265662 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
20 Hb_006252_040 0.0864397748 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004429_100 Hb_004429_100 Hb_004689_050 Hb_004689_050 Hb_004429_100--Hb_004689_050 Hb_033834_060 Hb_033834_060 Hb_004429_100--Hb_033834_060 Hb_000271_090 Hb_000271_090 Hb_004429_100--Hb_000271_090 Hb_006157_020 Hb_006157_020 Hb_004429_100--Hb_006157_020 Hb_001172_010 Hb_001172_010 Hb_004429_100--Hb_001172_010 Hb_000123_210 Hb_000123_210 Hb_004429_100--Hb_000123_210 Hb_004689_050--Hb_033834_060 Hb_001946_010 Hb_001946_010 Hb_004689_050--Hb_001946_010 Hb_000638_120 Hb_000638_120 Hb_004689_050--Hb_000638_120 Hb_000205_100 Hb_000205_100 Hb_004689_050--Hb_000205_100 Hb_100215_010 Hb_100215_010 Hb_004689_050--Hb_100215_010 Hb_020719_030 Hb_020719_030 Hb_033834_060--Hb_020719_030 Hb_009627_010 Hb_009627_010 Hb_033834_060--Hb_009627_010 Hb_033834_060--Hb_001172_010 Hb_001488_410 Hb_001488_410 Hb_033834_060--Hb_001488_410 Hb_000271_090--Hb_006157_020 Hb_031284_040 Hb_031284_040 Hb_000271_090--Hb_031284_040 Hb_000084_120 Hb_000084_120 Hb_000271_090--Hb_000084_120 Hb_000083_160 Hb_000083_160 Hb_000271_090--Hb_000083_160 Hb_000271_090--Hb_033834_060 Hb_006157_020--Hb_033834_060 Hb_006157_020--Hb_004689_050 Hb_006157_020--Hb_031284_040 Hb_012799_130 Hb_012799_130 Hb_006157_020--Hb_012799_130 Hb_001172_010--Hb_009627_010 Hb_002304_090 Hb_002304_090 Hb_001172_010--Hb_002304_090 Hb_007520_030 Hb_007520_030 Hb_001172_010--Hb_007520_030 Hb_000160_040 Hb_000160_040 Hb_001172_010--Hb_000160_040 Hb_001143_160 Hb_001143_160 Hb_000123_210--Hb_001143_160 Hb_000011_200 Hb_000011_200 Hb_000123_210--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_000123_210--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000123_210--Hb_000193_190 Hb_006827_020 Hb_006827_020 Hb_000123_210--Hb_006827_020 Hb_123352_020 Hb_123352_020 Hb_000123_210--Hb_123352_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.91134 4.13069 3.06594 3.06948 5.96109 8.55366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.21947 3.32247 3.82922 7.01311 2.41123

CAGE analysis