Hb_007520_030

Information

Type -
Description -
Location Contig7520: 35784-42258
Sequence    

Annotation

kegg
ID rcu:RCOM_1510590
description hypothetical protein
nr
ID XP_012080068.1
description PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
swissprot
ID Q9FXT6
description Peroxisomal membrane protein PEX14 OS=Arabidopsis thaliana GN=PEX14 PE=1 SV=2
trembl
ID A0A067K4F4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11477 PE=4 SV=1
Gene Ontology
ID GO:0005778
description peroxisomal membrane protein pex14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56874: 35793-40434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007520_030 0.0 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
2 Hb_002783_310 0.0612840967 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
3 Hb_000059_140 0.0683716844 - - rnase h, putative [Ricinus communis]
4 Hb_008406_110 0.0697855825 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
5 Hb_001172_010 0.0709061407 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
6 Hb_000771_180 0.0713585684 - - polypyrimidine tract binding protein, putative [Ricinus communis]
7 Hb_001502_060 0.0713858933 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
8 Hb_007558_120 0.0727150505 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
9 Hb_000664_070 0.0727376976 - - PREDICTED: protein cereblon [Jatropha curcas]
10 Hb_000510_310 0.073146107 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
11 Hb_131646_010 0.0752385169 - - protein arginine n-methyltransferase, putative [Ricinus communis]
12 Hb_000538_100 0.0769203849 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002304_090 0.077927697 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
14 Hb_000853_230 0.0785530838 - - syntaxin, putative [Ricinus communis]
15 Hb_006620_020 0.079008579 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
16 Hb_010381_060 0.0793938011 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
17 Hb_002686_250 0.0796676537 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
18 Hb_000320_200 0.0797225419 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
19 Hb_001486_340 0.0799670643 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
20 Hb_000424_010 0.0819748989 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007520_030 Hb_007520_030 Hb_002783_310 Hb_002783_310 Hb_007520_030--Hb_002783_310 Hb_000059_140 Hb_000059_140 Hb_007520_030--Hb_000059_140 Hb_008406_110 Hb_008406_110 Hb_007520_030--Hb_008406_110 Hb_001172_010 Hb_001172_010 Hb_007520_030--Hb_001172_010 Hb_000771_180 Hb_000771_180 Hb_007520_030--Hb_000771_180 Hb_001502_060 Hb_001502_060 Hb_007520_030--Hb_001502_060 Hb_002783_310--Hb_000771_180 Hb_050847_020 Hb_050847_020 Hb_002783_310--Hb_050847_020 Hb_000334_270 Hb_000334_270 Hb_002783_310--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_002783_310--Hb_000664_070 Hb_000046_010 Hb_000046_010 Hb_002783_310--Hb_000046_010 Hb_032278_020 Hb_032278_020 Hb_000059_140--Hb_032278_020 Hb_000059_140--Hb_000334_270 Hb_001357_380 Hb_001357_380 Hb_000059_140--Hb_001357_380 Hb_009222_010 Hb_009222_010 Hb_000059_140--Hb_009222_010 Hb_001486_340 Hb_001486_340 Hb_000059_140--Hb_001486_340 Hb_001390_110 Hb_001390_110 Hb_008406_110--Hb_001390_110 Hb_000926_190 Hb_000926_190 Hb_008406_110--Hb_000926_190 Hb_005276_210 Hb_005276_210 Hb_008406_110--Hb_005276_210 Hb_008406_110--Hb_000334_270 Hb_003849_250 Hb_003849_250 Hb_008406_110--Hb_003849_250 Hb_009627_010 Hb_009627_010 Hb_001172_010--Hb_009627_010 Hb_002304_090 Hb_002304_090 Hb_001172_010--Hb_002304_090 Hb_004429_100 Hb_004429_100 Hb_001172_010--Hb_004429_100 Hb_033834_060 Hb_033834_060 Hb_001172_010--Hb_033834_060 Hb_000160_040 Hb_000160_040 Hb_001172_010--Hb_000160_040 Hb_000771_180--Hb_050847_020 Hb_000160_350 Hb_000160_350 Hb_000771_180--Hb_000160_350 Hb_140049_030 Hb_140049_030 Hb_000771_180--Hb_140049_030 Hb_000771_180--Hb_000334_270 Hb_000771_180--Hb_000664_070 Hb_000072_350 Hb_000072_350 Hb_001502_060--Hb_000072_350 Hb_000529_260 Hb_000529_260 Hb_001502_060--Hb_000529_260 Hb_002477_130 Hb_002477_130 Hb_001502_060--Hb_002477_130 Hb_000424_010 Hb_000424_010 Hb_001502_060--Hb_000424_010 Hb_004128_050 Hb_004128_050 Hb_001502_060--Hb_004128_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.3558 34.8846 23.9208 20.9051 61.3613 44.8541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.3494 23.9718 23.0794 35.4906 18.4803

CAGE analysis