Hb_001390_110

Information

Type -
Description -
Location Contig1390: 112319-123490
Sequence    

Annotation

kegg
ID rcu:RCOM_1381610
description hypothetical protein
nr
ID XP_012074528.1
description PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09879 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10699: 112398-123175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001390_110 0.0 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
2 Hb_001936_060 0.0543067002 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
3 Hb_008406_110 0.0588015077 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
4 Hb_000390_180 0.059493866 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
5 Hb_000853_230 0.0622863775 - - syntaxin, putative [Ricinus communis]
6 Hb_000926_190 0.063675779 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
7 Hb_000794_050 0.0639369715 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
8 Hb_000038_170 0.0659619455 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
9 Hb_000365_120 0.0676213527 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
10 Hb_000879_200 0.0711417434 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
11 Hb_003025_110 0.0718431082 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
12 Hb_156973_010 0.072638415 - - conserved hypothetical protein [Ricinus communis]
13 Hb_023386_020 0.0738127076 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
14 Hb_033720_010 0.0750397456 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
15 Hb_003158_010 0.0758586658 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
16 Hb_006620_020 0.076557635 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
17 Hb_001258_090 0.0788730038 - - PREDICTED: protein spt2-like [Jatropha curcas]
18 Hb_009467_060 0.079533472 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
19 Hb_023386_040 0.0800102053 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
20 Hb_000853_420 0.0802851121 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001390_110 Hb_001390_110 Hb_001936_060 Hb_001936_060 Hb_001390_110--Hb_001936_060 Hb_008406_110 Hb_008406_110 Hb_001390_110--Hb_008406_110 Hb_000390_180 Hb_000390_180 Hb_001390_110--Hb_000390_180 Hb_000853_230 Hb_000853_230 Hb_001390_110--Hb_000853_230 Hb_000926_190 Hb_000926_190 Hb_001390_110--Hb_000926_190 Hb_000794_050 Hb_000794_050 Hb_001390_110--Hb_000794_050 Hb_001936_060--Hb_000390_180 Hb_001289_080 Hb_001289_080 Hb_001936_060--Hb_001289_080 Hb_156973_010 Hb_156973_010 Hb_001936_060--Hb_156973_010 Hb_001936_060--Hb_000853_230 Hb_002890_020 Hb_002890_020 Hb_001936_060--Hb_002890_020 Hb_008406_110--Hb_000926_190 Hb_005276_210 Hb_005276_210 Hb_008406_110--Hb_005276_210 Hb_000334_270 Hb_000334_270 Hb_008406_110--Hb_000334_270 Hb_003849_250 Hb_003849_250 Hb_008406_110--Hb_003849_250 Hb_007520_030 Hb_007520_030 Hb_008406_110--Hb_007520_030 Hb_000498_010 Hb_000498_010 Hb_000390_180--Hb_000498_010 Hb_000390_180--Hb_000853_230 Hb_016461_010 Hb_016461_010 Hb_000390_180--Hb_016461_010 Hb_006620_020 Hb_006620_020 Hb_000390_180--Hb_006620_020 Hb_000853_230--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_000853_230--Hb_004055_150 Hb_000879_200 Hb_000879_200 Hb_000853_230--Hb_000879_200 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_001926_030 Hb_001926_030 Hb_000853_230--Hb_001926_030 Hb_023386_020 Hb_023386_020 Hb_000926_190--Hb_023386_020 Hb_023386_040 Hb_023386_040 Hb_000926_190--Hb_023386_040 Hb_007054_060 Hb_007054_060 Hb_000926_190--Hb_007054_060 Hb_000926_190--Hb_000334_270 Hb_000926_190--Hb_000794_050 Hb_000926_190--Hb_000879_200 Hb_000368_020 Hb_000368_020 Hb_000794_050--Hb_000368_020 Hb_000794_050--Hb_033720_010 Hb_000794_050--Hb_000853_230 Hb_000794_050--Hb_006620_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.70049 5.56593 4.49449 3.56368 9.08677 8.13242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.76758 6.30381 4.70702 5.51681 5.68981

CAGE analysis