Hb_000334_270

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig334: 228313-233784
Sequence    

Annotation

kegg
ID rcu:RCOM_0968980
description Nuclear transcription factor Y subunit A-1, putative
nr
ID XP_012065570.1
description PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LXV5
description Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1
trembl
ID A0A067LH09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16766 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit a- isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35049: 228323-232621 , PASA_asmbl_35050: 231103-232621 , PASA_asmbl_35051: 232695-233770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_270 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
2 Hb_000926_190 0.0596963465 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
3 Hb_010068_040 0.0623512892 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
4 Hb_003849_060 0.0635983557 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
5 Hb_033153_070 0.064889978 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
6 Hb_006355_010 0.0657128303 - - PREDICTED: protein NLRC3 [Jatropha curcas]
7 Hb_002175_030 0.065918619 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
8 Hb_000771_180 0.0664312737 - - polypyrimidine tract binding protein, putative [Ricinus communis]
9 Hb_000059_140 0.066484639 - - rnase h, putative [Ricinus communis]
10 Hb_008406_110 0.0669761116 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
11 Hb_000794_050 0.067863811 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
12 Hb_002783_310 0.0682416937 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
13 Hb_000179_030 0.070451638 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
14 Hb_000649_070 0.072127835 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
15 Hb_003029_030 0.0721781487 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
16 Hb_003849_250 0.0727536671 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
17 Hb_005914_060 0.0738076235 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
18 Hb_001486_340 0.0743510127 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
19 Hb_001433_070 0.0750613422 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
20 Hb_131646_010 0.0754293257 - - protein arginine n-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000334_270 Hb_000334_270 Hb_000926_190 Hb_000926_190 Hb_000334_270--Hb_000926_190 Hb_010068_040 Hb_010068_040 Hb_000334_270--Hb_010068_040 Hb_003849_060 Hb_003849_060 Hb_000334_270--Hb_003849_060 Hb_033153_070 Hb_033153_070 Hb_000334_270--Hb_033153_070 Hb_006355_010 Hb_006355_010 Hb_000334_270--Hb_006355_010 Hb_002175_030 Hb_002175_030 Hb_000334_270--Hb_002175_030 Hb_023386_020 Hb_023386_020 Hb_000926_190--Hb_023386_020 Hb_023386_040 Hb_023386_040 Hb_000926_190--Hb_023386_040 Hb_007054_060 Hb_007054_060 Hb_000926_190--Hb_007054_060 Hb_000794_050 Hb_000794_050 Hb_000926_190--Hb_000794_050 Hb_000879_200 Hb_000879_200 Hb_000926_190--Hb_000879_200 Hb_000174_110 Hb_000174_110 Hb_010068_040--Hb_000174_110 Hb_010068_040--Hb_033153_070 Hb_010068_040--Hb_002175_030 Hb_003029_030 Hb_003029_030 Hb_010068_040--Hb_003029_030 Hb_001433_070 Hb_001433_070 Hb_010068_040--Hb_001433_070 Hb_000808_250 Hb_000808_250 Hb_003849_060--Hb_000808_250 Hb_003467_010 Hb_003467_010 Hb_003849_060--Hb_003467_010 Hb_011848_010 Hb_011848_010 Hb_003849_060--Hb_011848_010 Hb_000394_190 Hb_000394_190 Hb_003849_060--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_003849_060--Hb_002192_080 Hb_000649_070 Hb_000649_070 Hb_033153_070--Hb_000649_070 Hb_033720_010 Hb_033720_010 Hb_033153_070--Hb_033720_010 Hb_033153_070--Hb_002175_030 Hb_000959_270 Hb_000959_270 Hb_033153_070--Hb_000959_270 Hb_000179_030 Hb_000179_030 Hb_006355_010--Hb_000179_030 Hb_006355_010--Hb_002175_030 Hb_001486_340 Hb_001486_340 Hb_006355_010--Hb_001486_340 Hb_000771_180 Hb_000771_180 Hb_006355_010--Hb_000771_180 Hb_005337_090 Hb_005337_090 Hb_006355_010--Hb_005337_090 Hb_002175_030--Hb_001433_070 Hb_156973_010 Hb_156973_010 Hb_002175_030--Hb_156973_010 Hb_000853_230 Hb_000853_230 Hb_002175_030--Hb_000853_230 Hb_001089_110 Hb_001089_110 Hb_002175_030--Hb_001089_110 Hb_006620_020 Hb_006620_020 Hb_002175_030--Hb_006620_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6477 12.5466 10.6837 5.88713 18.2873 16.2888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5839 12.4667 5.62053 9.12156 7.14645

CAGE analysis