Hb_000808_250

Information

Type -
Description -
Location Contig808: 253668-255698
Sequence    

Annotation

kegg
ID rcu:RCOM_1434910
description hypothetical protein
nr
ID XP_012088877.1
description PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23213 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59110: 252392-252902 , PASA_asmbl_59111: 253661-255633 , PASA_asmbl_59112: 253926-255000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_250 0.0 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
2 Hb_006623_020 0.0443746271 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
3 Hb_003849_060 0.0555062961 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
4 Hb_021422_010 0.0684656565 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
5 Hb_000359_330 0.0706652603 - - conserved hypothetical protein [Ricinus communis]
6 Hb_178968_100 0.0709329254 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
7 Hb_106552_050 0.0715599486 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
8 Hb_011848_010 0.0750451086 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
9 Hb_002687_140 0.076075758 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
10 Hb_007007_050 0.0786660138 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
11 Hb_003050_200 0.0789997605 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
12 Hb_004450_060 0.0791224014 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
13 Hb_002918_210 0.0800118471 - - PREDICTED: uncharacterized protein LOC105138897 isoform X2 [Populus euphratica]
14 Hb_003018_060 0.0818892477 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
15 Hb_001348_070 0.0822488531 - - Uncharacterized protein isoform 1 [Theobroma cacao]
16 Hb_004976_020 0.082858012 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
17 Hb_001329_130 0.0831928369 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003142_070 0.0834037639 - - hypothetical protein F383_14657 [Gossypium arboreum]
19 Hb_000261_250 0.0853885544 - - elongation factor 1-alpha [Lepidium sativum]
20 Hb_001142_050 0.0855667993 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_000808_250 Hb_000808_250 Hb_006623_020 Hb_006623_020 Hb_000808_250--Hb_006623_020 Hb_003849_060 Hb_003849_060 Hb_000808_250--Hb_003849_060 Hb_021422_010 Hb_021422_010 Hb_000808_250--Hb_021422_010 Hb_000359_330 Hb_000359_330 Hb_000808_250--Hb_000359_330 Hb_178968_100 Hb_178968_100 Hb_000808_250--Hb_178968_100 Hb_106552_050 Hb_106552_050 Hb_000808_250--Hb_106552_050 Hb_006623_020--Hb_021422_010 Hb_000617_220 Hb_000617_220 Hb_006623_020--Hb_000617_220 Hb_003018_060 Hb_003018_060 Hb_006623_020--Hb_003018_060 Hb_000920_280 Hb_000920_280 Hb_006623_020--Hb_000920_280 Hb_003091_010 Hb_003091_010 Hb_006623_020--Hb_003091_010 Hb_000334_270 Hb_000334_270 Hb_003849_060--Hb_000334_270 Hb_003467_010 Hb_003467_010 Hb_003849_060--Hb_003467_010 Hb_011848_010 Hb_011848_010 Hb_003849_060--Hb_011848_010 Hb_000394_190 Hb_000394_190 Hb_003849_060--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_003849_060--Hb_002192_080 Hb_021422_010--Hb_003018_060 Hb_000032_490 Hb_000032_490 Hb_021422_010--Hb_000032_490 Hb_001828_160 Hb_001828_160 Hb_021422_010--Hb_001828_160 Hb_006960_050 Hb_006960_050 Hb_021422_010--Hb_006960_050 Hb_000359_330--Hb_011848_010 Hb_000359_330--Hb_003091_010 Hb_000359_330--Hb_000394_190 Hb_000359_330--Hb_006623_020 Hb_004450_060 Hb_004450_060 Hb_000359_330--Hb_004450_060 Hb_178968_100--Hb_004450_060 Hb_007026_030 Hb_007026_030 Hb_178968_100--Hb_007026_030 Hb_000088_200 Hb_000088_200 Hb_178968_100--Hb_000088_200 Hb_178968_100--Hb_003467_010 Hb_178968_100--Hb_006623_020 Hb_008803_090 Hb_008803_090 Hb_106552_050--Hb_008803_090 Hb_000976_320 Hb_000976_320 Hb_106552_050--Hb_000976_320 Hb_001926_030 Hb_001926_030 Hb_106552_050--Hb_001926_030 Hb_106552_050--Hb_002192_080 Hb_004055_150 Hb_004055_150 Hb_106552_050--Hb_004055_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.5723 17.0435 25.6634 11.4855 44.3587 32.7322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1573 31.1604 15.2268 12.942 9.81093

CAGE analysis