Hb_004450_060

Information

Type -
Description -
Location Contig4450: 64458-69499
Sequence    

Annotation

kegg
ID rcu:RCOM_0466950
description hypothetical protein
nr
ID XP_012078038.1
description PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KDB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13059 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42946: 68239-68694 , PASA_asmbl_42947: 64763-68983 , PASA_asmbl_42948: 64763-67075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004450_060 0.0 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
2 Hb_003467_010 0.0479485303 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
3 Hb_011848_010 0.0661408758 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
4 Hb_178968_100 0.0677712205 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
5 Hb_003091_010 0.0744685083 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
6 Hb_003849_060 0.0764446042 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
7 Hb_000359_330 0.076982083 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000808_250 0.0791224014 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
9 Hb_007632_110 0.0794116696 - - chromatin regulatory protein sir2, putative [Ricinus communis]
10 Hb_001357_380 0.0794153954 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_001142_050 0.0797559993 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
12 Hb_000394_190 0.0799844046 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
13 Hb_000617_220 0.0802194938 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
14 Hb_000368_020 0.0823972521 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
15 Hb_009222_010 0.0831695787 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_006623_020 0.0837050326 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
17 Hb_011942_080 0.0841394153 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
18 Hb_000211_110 0.0866616168 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
19 Hb_000392_050 0.0884784631 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
20 Hb_000058_040 0.0887547111 - - PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004450_060 Hb_004450_060 Hb_003467_010 Hb_003467_010 Hb_004450_060--Hb_003467_010 Hb_011848_010 Hb_011848_010 Hb_004450_060--Hb_011848_010 Hb_178968_100 Hb_178968_100 Hb_004450_060--Hb_178968_100 Hb_003091_010 Hb_003091_010 Hb_004450_060--Hb_003091_010 Hb_003849_060 Hb_003849_060 Hb_004450_060--Hb_003849_060 Hb_000359_330 Hb_000359_330 Hb_004450_060--Hb_000359_330 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_011942_080 Hb_011942_080 Hb_003467_010--Hb_011942_080 Hb_003467_010--Hb_003849_060 Hb_007632_110 Hb_007632_110 Hb_003467_010--Hb_007632_110 Hb_000394_190 Hb_000394_190 Hb_003467_010--Hb_000394_190 Hb_011848_010--Hb_003091_010 Hb_000617_220 Hb_000617_220 Hb_011848_010--Hb_000617_220 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_011848_010--Hb_000359_330 Hb_009222_010 Hb_009222_010 Hb_011848_010--Hb_009222_010 Hb_007026_030 Hb_007026_030 Hb_178968_100--Hb_007026_030 Hb_000088_200 Hb_000088_200 Hb_178968_100--Hb_000088_200 Hb_000808_250 Hb_000808_250 Hb_178968_100--Hb_000808_250 Hb_178968_100--Hb_003467_010 Hb_006623_020 Hb_006623_020 Hb_178968_100--Hb_006623_020 Hb_003091_010--Hb_000617_220 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_003091_010--Hb_000359_330 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240 Hb_003849_060--Hb_000808_250 Hb_000334_270 Hb_000334_270 Hb_003849_060--Hb_000334_270 Hb_003849_060--Hb_011848_010 Hb_003849_060--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_003849_060--Hb_002192_080 Hb_000359_330--Hb_000808_250 Hb_000359_330--Hb_000394_190 Hb_000359_330--Hb_006623_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.4249 14.7113 18.6665 7.0217 31.0549 29.8584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2413 17.9542 7.18529 9.99352 5.9113

CAGE analysis