Hb_000359_330

Information

Type -
Description -
Location Contig359: 325816-326606
Sequence    

Annotation

kegg
ID rcu:RCOM_1278160
description hypothetical protein
nr
ID XP_002527652.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNT3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1278160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 030_L01.ab1: 325654-326076

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011848_010 0.0667342491 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
3 Hb_003091_010 0.0693284501 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
4 Hb_000808_250 0.0706652603 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
5 Hb_000394_190 0.0738470551 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
6 Hb_006623_020 0.0760311995 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
7 Hb_004450_060 0.076982083 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
8 Hb_003142_070 0.0772918564 - - hypothetical protein F383_14657 [Gossypium arboreum]
9 Hb_000261_250 0.0774422733 - - elongation factor 1-alpha [Lepidium sativum]
10 Hb_000617_220 0.0799406464 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
11 Hb_106552_050 0.0811985998 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
12 Hb_000140_080 0.0819233777 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
13 Hb_004976_020 0.0833640179 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
14 Hb_007164_020 0.0846729576 - - hypothetical protein glysoja_025872 [Glycine soja]
15 Hb_007007_050 0.0855655 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
16 Hb_003849_060 0.0856965244 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
17 Hb_000244_300 0.086140543 - - PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Jatropha curcas]
18 Hb_002026_140 0.0879769364 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
19 Hb_002292_010 0.0880640643 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
20 Hb_000140_330 0.0904887494 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]

Gene co-expression network

sample Hb_000359_330 Hb_000359_330 Hb_011848_010 Hb_011848_010 Hb_000359_330--Hb_011848_010 Hb_003091_010 Hb_003091_010 Hb_000359_330--Hb_003091_010 Hb_000808_250 Hb_000808_250 Hb_000359_330--Hb_000808_250 Hb_000394_190 Hb_000394_190 Hb_000359_330--Hb_000394_190 Hb_006623_020 Hb_006623_020 Hb_000359_330--Hb_006623_020 Hb_004450_060 Hb_004450_060 Hb_000359_330--Hb_004450_060 Hb_011848_010--Hb_003091_010 Hb_000617_220 Hb_000617_220 Hb_011848_010--Hb_000617_220 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_011848_010--Hb_004450_060 Hb_009222_010 Hb_009222_010 Hb_011848_010--Hb_009222_010 Hb_003091_010--Hb_000617_220 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240 Hb_000808_250--Hb_006623_020 Hb_003849_060 Hb_003849_060 Hb_000808_250--Hb_003849_060 Hb_021422_010 Hb_021422_010 Hb_000808_250--Hb_021422_010 Hb_178968_100 Hb_178968_100 Hb_000808_250--Hb_178968_100 Hb_106552_050 Hb_106552_050 Hb_000808_250--Hb_106552_050 Hb_000261_250 Hb_000261_250 Hb_000394_190--Hb_000261_250 Hb_000244_300 Hb_000244_300 Hb_000394_190--Hb_000244_300 Hb_000787_170 Hb_000787_170 Hb_000394_190--Hb_000787_170 Hb_003467_010 Hb_003467_010 Hb_000394_190--Hb_003467_010 Hb_012799_110 Hb_012799_110 Hb_000394_190--Hb_012799_110 Hb_033095_020 Hb_033095_020 Hb_000394_190--Hb_033095_020 Hb_006623_020--Hb_021422_010 Hb_006623_020--Hb_000617_220 Hb_003018_060 Hb_003018_060 Hb_006623_020--Hb_003018_060 Hb_000920_280 Hb_000920_280 Hb_006623_020--Hb_000920_280 Hb_006623_020--Hb_003091_010 Hb_004450_060--Hb_003467_010 Hb_004450_060--Hb_178968_100 Hb_004450_060--Hb_003849_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
146.208 87.5978 82.6453 37.1127 159.089 119.185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.7332 96.2358 47.4018 36.1883 21.2446

CAGE analysis