Hb_000787_170

Information

Type -
Description -
Location Contig787: 189472-191563
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06400g
description POPTRDRAFT_861293; hypothetical protein
nr
ID XP_002306247.2
description hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
swissprot
ID Q9FY84
description Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1
trembl
ID B9H485
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06400g PE=4 SV=2
Gene Ontology
ID GO:0009522
description probable gamma-secretase subunit pen-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58136: 181480-188790 , PASA_asmbl_58138: 189502-191835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_170 0.0 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
2 Hb_000939_060 0.050953653 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
3 Hb_000394_190 0.0659780136 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_000261_250 0.088228304 - - elongation factor 1-alpha [Lepidium sativum]
5 Hb_003467_010 0.0911722339 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
6 Hb_035318_010 0.0920178752 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
7 Hb_000140_330 0.0928328932 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
8 Hb_000406_240 0.0946076942 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
9 Hb_046931_010 0.0963376463 - - hypothetical protein JCGZ_26924 [Jatropha curcas]
10 Hb_004450_060 0.0965395039 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
11 Hb_002043_090 0.096848542 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
12 Hb_000785_030 0.0971385274 - - hypothetical protein RCOM_0808030 [Ricinus communis]
13 Hb_011386_040 0.097596943 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
14 Hb_001910_020 0.0987096063 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
15 Hb_033095_020 0.09989565 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009222_010 0.1012505282 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_001474_030 0.1013360776 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
18 Hb_000359_330 0.1021340234 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000803_110 0.1022814756 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
20 Hb_031091_010 0.1031919859 - - crooked neck protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000787_170 Hb_000787_170 Hb_000939_060 Hb_000939_060 Hb_000787_170--Hb_000939_060 Hb_000394_190 Hb_000394_190 Hb_000787_170--Hb_000394_190 Hb_000261_250 Hb_000261_250 Hb_000787_170--Hb_000261_250 Hb_003467_010 Hb_003467_010 Hb_000787_170--Hb_003467_010 Hb_035318_010 Hb_035318_010 Hb_000787_170--Hb_035318_010 Hb_000140_330 Hb_000140_330 Hb_000787_170--Hb_000140_330 Hb_000939_060--Hb_000394_190 Hb_031091_010 Hb_031091_010 Hb_000939_060--Hb_031091_010 Hb_001946_300 Hb_001946_300 Hb_000939_060--Hb_001946_300 Hb_001771_120 Hb_001771_120 Hb_000939_060--Hb_001771_120 Hb_000939_060--Hb_000140_330 Hb_000394_190--Hb_000261_250 Hb_000244_300 Hb_000244_300 Hb_000394_190--Hb_000244_300 Hb_000394_190--Hb_003467_010 Hb_012799_110 Hb_012799_110 Hb_000394_190--Hb_012799_110 Hb_033095_020 Hb_033095_020 Hb_000394_190--Hb_033095_020 Hb_002192_080 Hb_002192_080 Hb_000261_250--Hb_002192_080 Hb_001142_050 Hb_001142_050 Hb_000261_250--Hb_001142_050 Hb_000359_330 Hb_000359_330 Hb_000261_250--Hb_000359_330 Hb_003849_060 Hb_003849_060 Hb_000261_250--Hb_003849_060 Hb_106552_050 Hb_106552_050 Hb_000261_250--Hb_106552_050 Hb_004450_060 Hb_004450_060 Hb_003467_010--Hb_004450_060 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_011942_080 Hb_011942_080 Hb_003467_010--Hb_011942_080 Hb_003467_010--Hb_003849_060 Hb_007632_110 Hb_007632_110 Hb_003467_010--Hb_007632_110 Hb_001910_020 Hb_001910_020 Hb_035318_010--Hb_001910_020 Hb_001882_040 Hb_001882_040 Hb_035318_010--Hb_001882_040 Hb_152453_010 Hb_152453_010 Hb_035318_010--Hb_152453_010 Hb_000392_050 Hb_000392_050 Hb_035318_010--Hb_000392_050 Hb_035318_010--Hb_000939_060 Hb_005883_010 Hb_005883_010 Hb_000140_330--Hb_005883_010 Hb_005188_060 Hb_005188_060 Hb_000140_330--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_000140_330--Hb_007943_120 Hb_000406_240 Hb_000406_240 Hb_000140_330--Hb_000406_240 Hb_006452_160 Hb_006452_160 Hb_000140_330--Hb_006452_160 Hb_000140_330--Hb_000368_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.234 81.9189 57.8836 37.5917 89.6441 130.721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.8446 62.1201 30.3414 29.663 27.0582

CAGE analysis