Hb_000939_060

Information

Type -
Description -
Location Contig939: 91293-110703
Sequence    

Annotation

kegg
ID rcu:RCOM_0810900
description terminal deoxycytidyl transferase rev1, putative (EC:2.7.7.7)
nr
ID XP_012076030.1
description PREDICTED: DNA repair protein REV1 [Jatropha curcas]
swissprot
ID A3EWL3
description DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1
trembl
ID B9RY76
description Terminal deoxycytidyl transferase rev1, putative OS=Ricinus communis GN=RCOM_0810900 PE=3 SV=1
Gene Ontology
ID GO:0005488
description dna repair protein rev1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63034: 91493-92503 , PASA_asmbl_63035: 92213-94002 , PASA_asmbl_63036: 94337-95539 , PASA_asmbl_63037: 98138-102387 , PASA_asmbl_63038: 107311-107438 , PASA_asmbl_63040: 110397-110854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000939_060 0.0 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
2 Hb_000787_170 0.050953653 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
3 Hb_000394_190 0.0860396039 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_031091_010 0.0901042061 - - crooked neck protein, putative [Ricinus communis]
5 Hb_001946_300 0.0916618699 - - PREDICTED: F-box protein At-B [Jatropha curcas]
6 Hb_001771_120 0.0924605426 - - K+ transport growth defect-like protein [Hevea brasiliensis]
7 Hb_000140_330 0.0938848102 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
8 Hb_002942_050 0.0939826786 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
9 Hb_019813_010 0.094846986 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
10 Hb_001910_020 0.0948889595 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
11 Hb_000755_030 0.0953103136 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
12 Hb_046931_010 0.0978873117 - - hypothetical protein JCGZ_26924 [Jatropha curcas]
13 Hb_005883_010 0.09816009 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007943_120 0.0988764517 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
15 Hb_000803_110 0.098990094 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
16 Hb_002043_090 0.0991468783 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
17 Hb_000796_190 0.0997142577 - - hypothetical protein F383_31148 [Gossypium arboreum]
18 Hb_080147_040 0.1005793199 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
19 Hb_000343_210 0.1014292773 - - ran-binding protein, putative [Ricinus communis]
20 Hb_008511_030 0.1015060696 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_000939_060 Hb_000939_060 Hb_000787_170 Hb_000787_170 Hb_000939_060--Hb_000787_170 Hb_000394_190 Hb_000394_190 Hb_000939_060--Hb_000394_190 Hb_031091_010 Hb_031091_010 Hb_000939_060--Hb_031091_010 Hb_001946_300 Hb_001946_300 Hb_000939_060--Hb_001946_300 Hb_001771_120 Hb_001771_120 Hb_000939_060--Hb_001771_120 Hb_000140_330 Hb_000140_330 Hb_000939_060--Hb_000140_330 Hb_000787_170--Hb_000394_190 Hb_000261_250 Hb_000261_250 Hb_000787_170--Hb_000261_250 Hb_003467_010 Hb_003467_010 Hb_000787_170--Hb_003467_010 Hb_035318_010 Hb_035318_010 Hb_000787_170--Hb_035318_010 Hb_000787_170--Hb_000140_330 Hb_000394_190--Hb_000261_250 Hb_000244_300 Hb_000244_300 Hb_000394_190--Hb_000244_300 Hb_000394_190--Hb_003467_010 Hb_012799_110 Hb_012799_110 Hb_000394_190--Hb_012799_110 Hb_033095_020 Hb_033095_020 Hb_000394_190--Hb_033095_020 Hb_008695_120 Hb_008695_120 Hb_031091_010--Hb_008695_120 Hb_001616_090 Hb_001616_090 Hb_031091_010--Hb_001616_090 Hb_002716_140 Hb_002716_140 Hb_031091_010--Hb_002716_140 Hb_000322_100 Hb_000322_100 Hb_031091_010--Hb_000322_100 Hb_003581_120 Hb_003581_120 Hb_031091_010--Hb_003581_120 Hb_007643_050 Hb_007643_050 Hb_031091_010--Hb_007643_050 Hb_000363_130 Hb_000363_130 Hb_001946_300--Hb_000363_130 Hb_000313_340 Hb_000313_340 Hb_001946_300--Hb_000313_340 Hb_140049_020 Hb_140049_020 Hb_001946_300--Hb_140049_020 Hb_147737_010 Hb_147737_010 Hb_001946_300--Hb_147737_010 Hb_032202_240 Hb_032202_240 Hb_001946_300--Hb_032202_240 Hb_000504_160 Hb_000504_160 Hb_001946_300--Hb_000504_160 Hb_007943_120 Hb_007943_120 Hb_001771_120--Hb_007943_120 Hb_002221_050 Hb_002221_050 Hb_001771_120--Hb_002221_050 Hb_000329_130 Hb_000329_130 Hb_001771_120--Hb_000329_130 Hb_000424_010 Hb_000424_010 Hb_001771_120--Hb_000424_010 Hb_009151_020 Hb_009151_020 Hb_001771_120--Hb_009151_020 Hb_002477_130 Hb_002477_130 Hb_001771_120--Hb_002477_130 Hb_005883_010 Hb_005883_010 Hb_000140_330--Hb_005883_010 Hb_005188_060 Hb_005188_060 Hb_000140_330--Hb_005188_060 Hb_000140_330--Hb_007943_120 Hb_000406_240 Hb_000406_240 Hb_000140_330--Hb_000406_240 Hb_006452_160 Hb_006452_160 Hb_000140_330--Hb_006452_160 Hb_000368_020 Hb_000368_020 Hb_000140_330--Hb_000368_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.29467 4.95244 3.2987 2.13651 5.02278 7.68146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.47693 2.69331 1.98921 1.45203 1.56506

CAGE analysis