Hb_003581_120

Information

Type -
Description -
Location Contig3581: 83541-94029
Sequence    

Annotation

kegg
ID rcu:RCOM_0698020
description hypothetical protein
nr
ID XP_012091942.1
description PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JP01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36941: 83531-93773 , PASA_asmbl_36942: 87671-88442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_120 0.0 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
2 Hb_002400_180 0.0366308351 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008695_120 0.0496263389 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
4 Hb_002097_090 0.0622954672 - - Splicing factor 3A subunit, putative [Ricinus communis]
5 Hb_000803_300 0.0640415275 - - nuclear movement protein nudc, putative [Ricinus communis]
6 Hb_001019_170 0.0657577615 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
7 Hb_000034_050 0.0668108336 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
8 Hb_000424_010 0.0673579947 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
9 Hb_000684_420 0.0678382426 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
10 Hb_002716_140 0.0694728741 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
11 Hb_007590_080 0.0707485192 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
12 Hb_000640_320 0.0707909721 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
13 Hb_000789_080 0.0709143488 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
14 Hb_000139_250 0.0711819041 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
15 Hb_000645_150 0.0711876751 - - zinc finger protein, putative [Ricinus communis]
16 Hb_003020_110 0.0712223677 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
17 Hb_031091_010 0.0712618472 - - crooked neck protein, putative [Ricinus communis]
18 Hb_002044_060 0.0715338466 - - elongation factor ts, putative [Ricinus communis]
19 Hb_009265_080 0.0719191406 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
20 Hb_000343_210 0.0722334658 - - ran-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003581_120 Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_003581_120--Hb_002400_180 Hb_008695_120 Hb_008695_120 Hb_003581_120--Hb_008695_120 Hb_002097_090 Hb_002097_090 Hb_003581_120--Hb_002097_090 Hb_000803_300 Hb_000803_300 Hb_003581_120--Hb_000803_300 Hb_001019_170 Hb_001019_170 Hb_003581_120--Hb_001019_170 Hb_000034_050 Hb_000034_050 Hb_003581_120--Hb_000034_050 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_002400_180--Hb_000803_300 Hb_002400_180--Hb_002097_090 Hb_002400_180--Hb_000034_050 Hb_031091_010 Hb_031091_010 Hb_008695_120--Hb_031091_010 Hb_000322_100 Hb_000322_100 Hb_008695_120--Hb_000322_100 Hb_008695_120--Hb_001019_170 Hb_008695_120--Hb_002400_180 Hb_002942_160 Hb_002942_160 Hb_008695_120--Hb_002942_160 Hb_002097_090--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_002097_090--Hb_000645_150 Hb_004934_090 Hb_004934_090 Hb_002097_090--Hb_004934_090 Hb_000076_080 Hb_000076_080 Hb_002097_090--Hb_000076_080 Hb_009620_040 Hb_009620_040 Hb_002097_090--Hb_009620_040 Hb_002097_090--Hb_000803_300 Hb_000522_090 Hb_000522_090 Hb_000803_300--Hb_000522_090 Hb_005245_130 Hb_005245_130 Hb_000803_300--Hb_005245_130 Hb_009265_080 Hb_009265_080 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250 Hb_008714_020 Hb_008714_020 Hb_001019_170--Hb_008714_020 Hb_001019_170--Hb_002400_180 Hb_001019_170--Hb_000076_080 Hb_006913_040 Hb_006913_040 Hb_001019_170--Hb_006913_040 Hb_000034_050--Hb_000322_100 Hb_000034_050--Hb_009265_080 Hb_001863_110 Hb_001863_110 Hb_000034_050--Hb_001863_110 Hb_000390_060 Hb_000390_060 Hb_000034_050--Hb_000390_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6124 15.3816 6.8628 9.51546 29.8486 31.9998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4917 11.4491 10.7907 10.1802 8.07087

CAGE analysis